Browse Element(s) Details


Os.34295.1.S1_at

Description gb:AK071998.1
DB_XREF= gi:32982021
TID=Os.34295.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34295 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013092L06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013092L06, full insert sequence.
FL= gb:AK071998.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g194501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g19394Os.28218.1.S1_x_at11/1112+11259915..11275651Ribulose bisphosphate carboxylase small chain A, chloroplast precursor, putative, expressed
LOC_Os12g19394Os.28218.1.S1_at11/1112+11259915..11275651Ribulose bisphosphate carboxylase small chain A, chloroplast precursor, putative, expressed
LOC_Os12g19394Os.28133.1.S1_s_at10/1112+11259915..11275651Ribulose bisphosphate carboxylase small chain A, chloroplast precursor, putative, expressed
LOC_Os12g19394Os.28133.1.S1_x_at7/1112+11259915..11275651Ribulose bisphosphate carboxylase small chain A, chloroplast precursor, putative, expressed
LOC_Os12g19394Os.36903.1.S1_at1/1112+11259915..11275651Ribulose bisphosphate carboxylase small chain A, chloroplast precursor, putative, expressed
LOC_Os12g19420OsAffx.26050.13.S1_x_at5/1112+11283045..11283470NAD, putative
LOC_Os12g19430OsAffx.30475.9.S1_s_at8/1112+11285878..11286291ATP synthase epsilon chain, putative
LOC_Os12g19440OsAffx.7641.1.S1_at11/1112+11293171..11293621hypothetical protein
LOC_Os12g19450OsAffx.12179.1.S1_at1/1112+11296872..11299519hypothetical protein
LOC_Os12g19450Os.34295.1.S1_at1/1112+11296872..11299519hypothetical protein
LOC_Os12g19450OsAffx.12179.1.S1_x_at1/1112+11296872..11299519hypothetical protein
LOC_Os12g19460Os.14919.1.S1_at5/1112+11303871..11309716transposon protein, putative, Mutator sub-class
LOC_Os12g19460OsAffx.29313.1.S1_at1/1112+11303871..11309716transposon protein, putative, Mutator sub-class
LOC_Os12g19470Os.10959.1.S2_at11/1112+11317733..11319883Ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed
LOC_Os12g19470Os.10959.1.S1_at11/1112+11317733..11319883Ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed
LOC_Os12g19470Os.40291.1.A1_x_at1/1112+11317733..11319883Ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed
LOC_Os12g19480NANA12+11324158..11330239retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34295.1.S1_at--1103--351Chr11:9370736..9370760 (25 bp)
ATCAATAGGACGATGTCGAGGACCA
NONE
Os.34295.1.S1_at--316--2213Chr11:9370820..9370844 (25 bp)
ACAAGTCTGCGGAGAAAAACAACAT
NONE
Os.34295.1.S1_at--458--2411Chr11:9370836..9370860 (25 bp)
AAACAACATAGGAGGCCGCGAGCCA
NONE
Os.34295.1.S1_at--958--4211Chr11:9370930..9370954 (25 bp)
CCGCTGGATCCAGAGTTTCTTCTGG
NONE
Os.34295.1.S1_at--525--7971Chr11:9370935..9370959 (25 bp)
GGATCCAGAGTTTCTTCTGGACGGT
NONE
Os.34295.1.S1_at--704--911Chr11:9371028..9371052 (25 bp)
AGGCTATGTAAACCCCTCACCTTCT
NONE
Os.34295.1.S1_at--574--32315Chr12:11298240..11298369 (25 bp)
CAAGCAATAGCTCTCTCATTTTTCT
LOC_Os12g19450
Os.34295.1.S1_at--1055--9611Chr11:9371146..9371170 (25 bp)
TCAGGAATCCGGAAGTGACATATTA
NONE
Os.34295.1.S1_at--171--4271Chr11:9371154..9371178 (25 bp)
CCGGAAGTGACATATTATTTCTTTT
NONE
Os.34295.1.S1_at--374--3051Chr11:9371203..9371227 (25 bp)
AATCTAATGTATTACCAGAGGTTGT
NONE
Os.34295.1.S1_at--685--7893Chr11:9371222..9371246 (25 bp)
GGTTGTTTTAATCTTTTATCTCAAT
NONE
Target Sequence 
ATCAATAGGACGATGTCGAGGACCAGACTTATGTATGAATGTGCCAAGAACTCAGAATTGACACGACAAACTGGGTCAAA
ATTCACAAGTCTGCGGAGAAAAACAACATAGGAGGCCGCGAGCCAAACCATGGGCTGGTTGGGTCGGCCCCAGGTTCGGC
CCAACCAGGGGGTTCGGCCGAACCTCCCTCATCGCCGCTGGATCCAGAGTTTCTTCTGGACGGTGTGGATTAGCTCCCAA
TGACGGTTGGAGGGTATTTCCAACCATTCCAACTGTCACAACCGTCCTTGGGAGGCTATGTAAACCCCTCACCTTCTCAC
TTCACTCACACACCTCAAGCAATAGCTCTCTCATTTTTCTCATGTTTAGTTTAGTAGTATCTAGCTGGTGGAATAGAATT
AGAATAGGAATCAGGAATCCGGAAGTGACATATTATTTCTTTTTAATATATGTCATCTACCAAATATAATCTAATGTATT
ACCAGAGGTTGTTTTAATCTTTTATCTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34295.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis