Browse Element(s) Details


OsAffx.7641.1.S1_at

Description tigr:9640.m01922
TID=OsAffx.7641.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1944011/11hypothetical protein
LOC_Os08g223701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g19394Os.28218.1.S1_x_at11/1112+11259915..11275651Ribulose bisphosphate carboxylase small chain A, chloroplast precursor, putative, expressed
LOC_Os12g19394Os.28218.1.S1_at11/1112+11259915..11275651Ribulose bisphosphate carboxylase small chain A, chloroplast precursor, putative, expressed
LOC_Os12g19394Os.28133.1.S1_s_at10/1112+11259915..11275651Ribulose bisphosphate carboxylase small chain A, chloroplast precursor, putative, expressed
LOC_Os12g19394Os.28133.1.S1_x_at7/1112+11259915..11275651Ribulose bisphosphate carboxylase small chain A, chloroplast precursor, putative, expressed
LOC_Os12g19394Os.36903.1.S1_at1/1112+11259915..11275651Ribulose bisphosphate carboxylase small chain A, chloroplast precursor, putative, expressed
LOC_Os12g19420OsAffx.26050.13.S1_x_at5/1112+11283045..11283470NAD, putative
LOC_Os12g19430OsAffx.30475.9.S1_s_at8/1112+11285878..11286291ATP synthase epsilon chain, putative
LOC_Os12g19440OsAffx.7641.1.S1_at11/1112+11293171..11293621hypothetical protein
LOC_Os12g19450OsAffx.12179.1.S1_at1/1112+11296872..11299519hypothetical protein
LOC_Os12g19450Os.34295.1.S1_at1/1112+11296872..11299519hypothetical protein
LOC_Os12g19450OsAffx.12179.1.S1_x_at1/1112+11296872..11299519hypothetical protein
LOC_Os12g19460Os.14919.1.S1_at5/1112+11303871..11309716transposon protein, putative, Mutator sub-class
LOC_Os12g19460OsAffx.29313.1.S1_at1/1112+11303871..11309716transposon protein, putative, Mutator sub-class
LOC_Os12g19470Os.10959.1.S2_at11/1112+11317733..11319883Ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed
LOC_Os12g19470Os.10959.1.S1_at11/1112+11317733..11319883Ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed
LOC_Os12g19470Os.40291.1.A1_x_at1/1112+11317733..11319883Ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006278biological_processRNA-dependent DNA replication
GO:0003723molecular_functionRNA binding
GO:0003964molecular_functionRNA-directed DNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7641.1.S1_at--155--14Chr11:12226444..12226468 (25 bp)
CCCCTTAAGTCCTGAGGTGGGAGCA
NONE
OsAffx.7641.1.S1_at--150--9794Chr11:12226449..12226473 (25 bp)
TAAGTCCTGAGGTGGGAGCACGCCC
NONE
OsAffx.7641.1.S1_at--775--2854Chr11:12226450..12226474 (25 bp)
AAGTCCTGAGGTGGGAGCACGCCCA
NONE
OsAffx.7641.1.S1_at--177--5956Chr11:12226464..12226488 (25 bp)
GAGCACGCCCATGGGTGTGTTGTGG
NONE
OsAffx.7641.1.S1_at--138--4858Chr11:12226490..12226514 (25 bp)
GCTAAAGAGGCACCCAAGGTCAGTG
NONE
OsAffx.7641.1.S1_at--397--9837Chr11:12226492..12226516 (25 bp)
TAAAGAGGCACCCAAGGTCAGTGAC
NONE
OsAffx.7641.1.S1_at--193--2799Chr11:12226494..12226518 (25 bp)
AAGAGGCACCCAAGGTCAGTGACAA
NONE
OsAffx.7641.1.S1_at--276--22312Chr11:12226515..12226539 (25 bp)
ACAAGTGGGCCCAAGTCGTGGCTGT
NONE
OsAffx.7641.1.S1_at--731--1095Chr11:12226518..12226539 (22 bp)
AGTGGGCCCAAGTCGTGGCTGTCTA
NONE
OsAffx.7641.1.S1_at--193--7574Chr11:12226521..12226960 (25 bp)
GGGCCCAAGTCGTGGCTGTCTATGA
NONE
OsAffx.7641.1.S1_at--885--8392Chr12:11293439..11293463 (25 bp)
GGCCCAAGTCGTGGCTGTCTATGAG
LOC_Os12g19440
Target Sequence 
CCCCTTAAGTCCTGAGGTGGGAGCACGCCCATGGGTGTGTTGTGGGGCTAAAGAGGCACCCAAGGTCAGTGACAAGTGGG
CCCAAGTCGTGGCTGTCTATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7641.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis