Browse Element(s) Details


OsAffx.31781.1.S1_x_at

Description tigr:9640.m01722
TID=OsAffx.31781.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1757011/11GDSL-motif lipase/hydrolase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17530Os.49192.1.S1_at11/1112+10046741..10050428expressed protein
LOC_Os12g17540OsAffx.19718.1.S1_at11/1112+10050822..10052611Vignain precursor, putative
LOC_Os12g17550OsAffx.7619.1.S1_at11/1112+10056128..10065032Leucine Rich Repeat family protein, expressed
LOC_Os12g17550OsAffx.28164.2.S1_at1/1112+10056128..10065032Leucine Rich Repeat family protein, expressed
LOC_Os12g17560NANA12+10066226..10066525hypothetical protein
LOC_Os12g17570OsAffx.31781.1.S1_x_at11/1112+10067571..10069441GDSL-motif lipase/hydrolase, putative
LOC_Os12g17570Os.51561.1.S1_x_at6/1112+10067571..10069441GDSL-motif lipase/hydrolase, putative
LOC_Os12g17570Os.28229.2.S1_x_at1/1112+10067571..10069441GDSL-motif lipase/hydrolase, putative
LOC_Os12g17580OsAffx.17234.1.S1_at1/1112+10072714..10073298transposon protein, putative, unclassified
LOC_Os12g17590OsAffx.31782.1.S1_at10/1112+10075714..10077504expressed protein
LOC_Os12g17600Os.12594.1.S1_x_at9/1112+10077831..10079028Ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed
LOC_Os12g17600Os.39363.1.A1_x_at2/1112+10077831..10079028Ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed
LOC_Os12g17600Os.28218.1.S1_x_at1/1112+10077831..10079028Ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed
LOC_Os12g17610OsAffx.7621.1.S1_at11/1112+10082760..10083598hypothetical protein
LOC_Os12g17620Os.53142.1.S1_at3/1112+10085505..10090947retrotransposon protein, putative, unclassified
LOC_Os12g17620Os.23706.1.A1_x_at1/1112+10085505..10090947retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31781.1.S1_x_at--470--2651Chr12:10068101..10068125 (25 bp)
AACCAAGACGACGATGACGCTGCTC
LOC_Os12g17570
OsAffx.31781.1.S1_x_at--680--6311Chr12:10068089..10068113 (25 bp)
GATGACGCTGCTCCTAGTAGCGATT
LOC_Os12g17570
OsAffx.31781.1.S1_x_at--158--3711Chr12:10068076..10068100 (25 bp)
CTAGTAGCGATTCCGGCACCGGCAT
LOC_Os12g17570
OsAffx.31781.1.S1_x_at--1091--8271Chr12:10068056..10068080 (25 bp)
GGCATTAGCATCTCTCTCGGCGGCG
LOC_Os12g17570
OsAffx.31781.1.S1_x_at--871--971Chr12:10067935..10067959 (25 bp)
AGGAGATCAACAGCGCGATCGCCAT
LOC_Os12g17570
OsAffx.31781.1.S1_x_at--880--1651Chr12:10067924..10067948 (25 bp)
AGCGCGATCGCCATCTACAACAGGG
LOC_Os12g17570
OsAffx.31781.1.S1_x_at--1130--8811Chr12:10067896..10067920 (25 bp)
TGTTGTCCATGGTGAAGCGGCTCAA
LOC_Os12g17570
OsAffx.31781.1.S1_x_at--52--1911Chr12:10067717..10067741 (25 bp)
ACGTGCCTGCCGATGCAGCAGCCGT
LOC_Os12g17570
OsAffx.31781.1.S1_x_at--230--8391Chr12:10067690..10067714 (25 bp)
GGCGACCGGAGCAAGTACGTGTTCT
LOC_Os12g17570
OsAffx.31781.1.S1_x_at--516--1931Chr12:10067648..10067672 (25 bp)
ACGGAGGCGGCCAACCGGATCTACG
LOC_Os12g17570
OsAffx.31781.1.S1_x_at--675--6391Chr12:10067631..10067655 (25 bp)
GATCTACGCCGCCAGGGCGTTCAAC
LOC_Os12g17570
Target Sequence 
AACCAAGACGACGATGACGCTGCTCCTAGTAGCGATTCCGGCACCGGCATTAGCATCTCTCTCGGCGGCGTCGGTCTGAC
CGTCGGCGGCGGCGGCGGCGGAGGGAGTACGCGAGCGGCGAACGCGAGCAGGAGCGGCGGCAATGGCGGCGGCGGGGCGT
GCAACGAGGAGATCAACAGCGCGATCGCCATCTACAACAGGGGGTTGTTGTCCATGGTGAAGCGGCTCAACGGCGGCGGC
GGCGGGGGGAGGATGGCGGGGGCGACGGTGGTGTACCTGGACACGGTGAGGACGGGGAGGGCGGTGGCGGCGAGCGCGGC
GGCGCACGGGTTCGAGGTGCTCGACCGCGGGTGCTGCGGCGTGGGGCGGAACAACGGGCAGATCACGTGCCTGCCGATGC
AGCAGCCGTGCGGCGACCGGAGCAAGTACGTGTTCTGGGACGCCTTCCACCCGACGGAGGCGGCCAACCGGATCTACGCC
GCCAGGGCGTTCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31781.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis