Browse Element(s) Details


OsAffx.27879.1.S1_at

Description tigr:9634.m02913
TID=OsAffx.27879.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3030010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g30260NANA6+17458707..17462983retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g30270NANA6+17465821..17468563hypothetical protein
LOC_Os06g30280Os.16112.1.S1_s_at11/116+17469749..17470494expressed protein
LOC_Os06g30280OsAffx.4971.1.S1_at8/116+17469749..17470494expressed protein
LOC_Os06g30290OsAffx.31780.2.S1_s_at6/116+17477779..17481218transposon protein, putative, unclassified
LOC_Os06g30290OsAffx.31780.2.S1_x_at2/116+17477779..17481218transposon protein, putative, unclassified
LOC_Os06g30290OsAffx.21663.1.S1_at1/116+17477779..17481218transposon protein, putative, unclassified
LOC_Os06g30290OsAffx.31780.1.S1_at1/116+17477779..17481218transposon protein, putative, unclassified
LOC_Os06g30300OsAffx.27879.1.S1_at10/116+17486640..17487153hypothetical protein
LOC_Os06g30310Os.18215.1.S1_at11/116+17487835..17500187Alpha-glucan water dikinase, chloroplast precursor, putative, expressed
LOC_Os06g30310OsAffx.10482.1.S1_x_at1/116+17487835..17500187Alpha-glucan water dikinase, chloroplast precursor, putative, expressed
LOC_Os06g30320Os.21423.1.S1_at11/116+17504130..17510949Nucleolar complex-associated protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27879.1.S1_at--148--8251Chr06:17487099..17487123 (25 bp)
GGCACTAACCATGATGAGATCGGAG
LOC_Os06g30300
OsAffx.27879.1.S1_at--47--6311Chr06:17487087..17487111 (25 bp)
GATGAGATCGGAGCAACTCGGCCTT
LOC_Os06g30300
OsAffx.27879.1.S1_at--370--6391Chr06:17487082..17487106 (25 bp)
GATCGGAGCAACTCGGCCTTTGCTT
LOC_Os06g30300
OsAffx.27879.1.S1_at--588--10271Chr06:17487064..17487088 (25 bp)
TTTGCTTCCTCGACAGTGCCGCGGT
LOC_Os06g30300
OsAffx.27879.1.S1_at--766--2131Chr06:17487052..17487076 (25 bp)
ACAGTGCCGCGGTGAGCTTGGCCTC
LOC_Os06g30300
OsAffx.27879.1.S1_at--295--10871Chr06:17487035..17487059 (25 bp)
TTGGCCTCCTCAATCTTCATCAACA
LOC_Os06g30300
OsAffx.27879.1.S1_at--800--3232Chr06:25419438..25419466 (23 bp)
CAACAACGACAGCAGGAAGGATGGT
NONE
OsAffx.27879.1.S1_at--494--7431Chr06:17486992..17487016 (25 bp)
GTGTATGCAGCGTGGATGCTTCATG
LOC_Os06g30300
OsAffx.27879.1.S1_at--573--3391Chr06:17486985..17487009 (25 bp)
CAGCGTGGATGCTTCATGGTGTGCA
LOC_Os06g30300
OsAffx.27879.1.S1_at--288--4911Chr06:17486728..17486999 (25 bp)
GCTTCATGGTGTGCAGATTCTCAGA
LOC_Os06g30300
OsAffx.27879.1.S1_at--473--9631NONE
TCATGGTGTGCAGATTCTCAGAAGC
NONE
Target Sequence 
GGCACTAACCATGATGAGATCGGAGCAACTCGGCCTTTGCTTCCTCGACAGTGCCGCGGTGAGCTTGGCCTCCTCAATCT
TCATCAACAACGACAGCAGGAAGGATGGTGTATGCAGCGTGGATGCTTCATGGTGTGCAGATTCTCAGAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27879.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis