Browse Element(s) Details


Os.18215.1.S1_at

Description gb:AK058235.1
DB_XREF= gi:32968253
TID=Os.18215.1
CNT=15
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.18215 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033129M19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-011-D09, full insert sequence.
FL= gb:AK058235.1 gb:AK103463.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3031011/11Alpha-glucan water dikinase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g30260NANA6+17458707..17462983retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g30270NANA6+17465821..17468563hypothetical protein
LOC_Os06g30280Os.16112.1.S1_s_at11/116+17469749..17470494expressed protein
LOC_Os06g30280OsAffx.4971.1.S1_at8/116+17469749..17470494expressed protein
LOC_Os06g30290OsAffx.31780.2.S1_s_at6/116+17477779..17481218transposon protein, putative, unclassified
LOC_Os06g30290OsAffx.31780.2.S1_x_at2/116+17477779..17481218transposon protein, putative, unclassified
LOC_Os06g30290OsAffx.21663.1.S1_at1/116+17477779..17481218transposon protein, putative, unclassified
LOC_Os06g30290OsAffx.31780.1.S1_at1/116+17477779..17481218transposon protein, putative, unclassified
LOC_Os06g30300OsAffx.27879.1.S1_at10/116+17486640..17487153hypothetical protein
LOC_Os06g30310Os.18215.1.S1_at11/116+17487835..17500187Alpha-glucan water dikinase, chloroplast precursor, putative, expressed
LOC_Os06g30310OsAffx.10482.1.S1_x_at1/116+17487835..17500187Alpha-glucan water dikinase, chloroplast precursor, putative, expressed
LOC_Os06g30320Os.21423.1.S1_at11/116+17504130..17510949Nucleolar complex-associated protein, expressed
LOC_Os06g30330OsAffx.18105.3.S1_at11/116+17518054..17518602immediate-early fungal elicitor protein CMPG1, putative
LOC_Os06g30340NANA6+17522117..17523148retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005983biological_processstarch catabolism
GO:0009631biological_processcold acclimation
GO:0005739cellular_componentmitochondrion
GO:0050521molecular_functionalpha-glucan, water dikinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18215.1.S1_at--948--7231Chr06:17498731..17498755 (25 bp)
GTCGCGCCATGAGCTTTGTATGTAA
LOC_Os06g30310
Os.18215.1.S1_at--945--10752Chr06:17498767..17498864 (25 bp)
TTGACTCTCCCAAGGTACTGGGTTT
LOC_Os06g30310
Os.18215.1.S1_at--581--1931Chr06:17498856..17498880 (25 bp)
ACTGGGTTTCCCAAGCAAGCCAATT
LOC_Os06g30310
Os.18215.1.S1_at--829--3231Chr06:17498871..17498895 (25 bp)
CAAGCCAATTGGTCTCTTCATAAAG
LOC_Os06g30310
Os.18215.1.S1_at--283--6052Chr06:17498895..17498919 (25 bp)
GAGATCAATCATCTTTCGTTCAGAT
LOC_Os06g30310
Os.18215.1.S1_at--179--6591Chr06:17499119..17499143 (25 bp)
GATTCCAAAAATCTATCCTCTCGAG
LOC_Os06g30310
Os.18215.1.S1_at--1146--52Chr06:17499145..17499169 (25 bp)
ATTGCACGGGCTGGTCATGCCATTG
LOC_Os06g30310
Os.18215.1.S1_at--316--8831Chr06:17499168..17499192 (25 bp)
TGAGGAGCTTTATGGGTCCCCACAG
LOC_Os06g30310
Os.18215.1.S1_at--1026--9912Chr06:17499310..17499334 (25 bp)
TACGGGCCGTGGGACATGTATAACA
LOC_Os06g30310
Os.18215.1.S1_at--770--3511Chr06:17499324..17499348 (25 bp)
CATGTATAACACGTTACGCCCTTTT
LOC_Os06g30310
Os.18215.1.S1_at--661--10191Chr06:17499386..17499410 (25 bp)
TATAGGGCTTATTTTATCGCCAATA
LOC_Os06g30310
Target Sequence 
GTCGCGCCATGAGCTTTGTATGTAAGAAAAACGACCTTGACTCTCCCAAGGTACTGGGTTTCCCAAGCAAGCCAATTGGT
CTCTTCATAAAGAGATCAATCATCTTTCGTTCAGATTCCAACGGTGAGGATTTAGAAGGGTATGCTGGAGCAGGACTGTA
TGATAGTGTCCCTATGGATGAGGAAGATGAAGTCATACTCGACTACACCACCGACCCCCTCATTACAGATCAGGGATTCC
AAAAATCTATCCTCTCGAGCATTGCACGGGCTGGTCATGCCATTGAGGAGCTTTATGGGTCCCCACAGGATGTTGAGGGT
GCAGTGAAGGAAGGGAAGCTATACGTAGTACAGACAAGACCACAGATGTAATCTATATGTATATTTTATAGCCAAGTCAA
TCAGGCAATGTTGTAGAGTAAGATATACGGGCCGTGGGACATGTATAACACGTTACGCCCTTTTTTTTATTATTTGCTTT
CATACTCACAATACACTAATTTATAGGGCTTATTTTATCGCCAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18215.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis