Browse Element(s) Details


OsAffx.31780.1.S1_at

Description gb:NM_193189.1
DB_XREF= gi:34913461
GEN=P0702H08.20
TID=OsAffx.31780.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0702H08.20 (P0702H08.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3471011/11transposon protein, putative, unclassified
LOC_Os08g251601/11transposon protein, putative, unclassified
LOC_Os06g302901/11transposon protein, putative, unclassified
LOC_Os01g592801/11transposon protein, putative, unclassified
LOC_Os09g038001/11hypothetical protein
LOC_Os11g301501/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34670Os.32787.2.S1_x_at11/111+19442093..19449256calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g34670Os.32787.3.S1_s_at11/111+19442093..19449256calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g34680Os.41057.1.S1_at10/111+19450258..19456039hypothetical protein
LOC_Os01g34680Os.55478.1.S1_at1/111+19450258..19456039hypothetical protein
LOC_Os01g34680Os.5306.1.S1_at1/111+19450258..19456039hypothetical protein
LOC_Os01g34690Os.8252.1.S1_s_at11/111+19456826..19460730expressed protein
LOC_Os01g34690Os.8252.1.S1_at4/111+19456826..19460730expressed protein
LOC_Os01g34690Os.37713.1.S1_at1/111+19456826..19460730expressed protein
LOC_Os01g34700Os.7133.1.S1_at11/111+19462649..19466740Dienelactone hydrolase family protein, expressed
LOC_Os01g34710OsAffx.31780.1.S1_at11/111+19469798..19475260transposon protein, putative, unclassified
LOC_Os01g34710OsAffx.31780.2.S1_s_at11/111+19469798..19475260transposon protein, putative, unclassified
LOC_Os01g34710OsAffx.31780.2.S1_x_at2/111+19469798..19475260transposon protein, putative, unclassified
LOC_Os01g34720OsAffx.6971.1.S1_at3/111+19479590..19481575retrotransposon protein, putative, unclassified
LOC_Os01g34720OsAffx.31700.1.S1_at1/111+19479590..19481575retrotransposon protein, putative, unclassified
LOC_Os01g34730Os.33878.1.S1_at2/111+19486168..19490326retrotransposon protein, putative, unclassified
LOC_Os01g34730Os.27102.1.S1_x_at1/111+19486168..19490326retrotransposon protein, putative, unclassified
LOC_Os01g34730OsAffx.22699.1.S1_x_at1/111+19486168..19490326retrotransposon protein, putative, unclassified
LOC_Os01g34740NANA1+19491271..19491708transposon protein, putative, unclassified
LOC_Os01g34750NANA1+19492781..19494166retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g34760NANA1+19495149..19496834hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31780.1.S1_at--623--3531Chr01:19474880..19474904 (25 bp)
CATGCCAATACGCTTGTAAGTGAGA
LOC_Os01g34710
OsAffx.31780.1.S1_at--1015--6431Chr01:19474906..19474930 (25 bp)
GATCACTAGTCATTATGATGGCAAA
LOC_Os01g34710
OsAffx.31780.1.S1_at--462--5395Chr11:17027504..17027528 (25 bp)
GAAGCACATCCTTGAGATGACTCAT
LOC_Os11g30150
OsAffx.31780.1.S1_at--728--5711Chr01:19474960..19474984 (25 bp)
GACTCATATGGAAAATCAACTCAGA
LOC_Os01g34710
OsAffx.31780.1.S1_at--713--451Chr01:19475002..19475026 (25 bp)
ATCTGATGGATTTTTAGTGCACCTC
LOC_Os01g34710
OsAffx.31780.1.S1_at--557--7931Chr01:19475009..19475033 (25 bp)
GGATTTTTAGTGCACCTCATCATGA
LOC_Os01g34710
OsAffx.31780.1.S1_at--751--7331Chr01:19475018..19475042 (25 bp)
GTGCACCTCATCATGAGATCTCTAG
LOC_Os01g34710
OsAffx.31780.1.S1_at--1137--8891Chr01:19475031..19475055 (25 bp)
TGAGATCTCTAGGTCTTAACTATGA
LOC_Os01g34710
OsAffx.31780.1.S1_at--941--3751Chr01:19475037..19475061 (25 bp)
CTCTAGGTCTTAACTATGATCCATT
LOC_Os01g34710
OsAffx.31780.1.S1_at--748--9932Chr09:1924967..1924987 (21 bp)
TACCCAGAAAGAGAAGTGGACCATA
LOC_Os09g03800
OsAffx.31780.1.S1_at--969--1431Chr01:19475104..19475128 (25 bp)
AGAACTGATCTCACACTCAGTGGAA
LOC_Os01g34710
Target Sequence 
CATGCCAATACGCTTGTAAGTGAGATGATCACTAGTCATTATGATGGCAAAAGTGGTATAAGGAAGCACATCCTTGAGAT
GACTCATATGGAAAATCAACTCAGATCCATGGATATGGAAATATCTGATGGATTTTTAGTGCACCTCATCATGAGATCTC
TAGGTCTTAACTATGATCCATTCAAAATAAATTATAATACCCAGAAAGAGAAGTGGACCATACAAGAACTGATCTCACAC
TCAGTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31780.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis