Browse Element(s) Details


OsAffx.6971.1.S1_at

Description tigr:9639.m00192
TID=OsAffx.6971.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0287011/11hypothetical protein
LOC_Os01g347203/11retrotransposon protein, putative, unclassified
LOC_Os11g228101/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02830Os.12636.1.S1_at11/1111+946566..951357serine/threonine-protein kinase NAK, putative, expressed
LOC_Os11g02830Os.54274.1.S1_at2/1111+946566..951357serine/threonine-protein kinase NAK, putative, expressed
LOC_Os11g02840Os.36521.1.S1_at11/1111+958797..960059protein kinase family protein, putative
LOC_Os11g02840Os.54274.1.S1_at4/1111+958797..960059protein kinase family protein, putative
LOC_Os11g02850NANA11+960665..961844hypothetical protein
LOC_Os11g02860OsAffx.18642.1.S1_at11/1111+968862..969385hypothetical protein
LOC_Os11g02870OsAffx.6971.1.S1_at11/1111+973629..974345hypothetical protein
LOC_Os11g02880Os.54901.1.S1_at1/1111+974834..982948retrotransposon protein, putative, unclassified
LOC_Os11g02890OsAffx.20604.2.S1_at1/1111+985513..990125retrotransposon protein, putative, unclassified
LOC_Os11g02890OsAffx.10371.1.S1_at1/1111+985513..990125retrotransposon protein, putative, unclassified
LOC_Os11g02890OsAffx.22699.1.S1_x_at1/1111+985513..990125retrotransposon protein, putative, unclassified
LOC_Os11g02900NANA11+995579..997303retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6971.1.S1_at--502--2752Chr11:973825..973849 (25 bp)
AAGAAACCCGCAGAGGCACAATCGT
LOC_Os11g02870
OsAffx.6971.1.S1_at--995--6191Chr11:973837..973861 (25 bp)
GAGGCACAATCGTCCAGAAGTACAA
LOC_Os11g02870
OsAffx.6971.1.S1_at--940--9491Chr11:973902..973926 (25 bp)
TCTCCAGGCAATGCAGGTACTGCAG
LOC_Os11g02870
OsAffx.6971.1.S1_at--905--8831Chr11:974056..974080 (25 bp)
TGATCAACCAATCCGGTGTGCTAGT
LOC_Os11g02870
OsAffx.6971.1.S1_at--789--7311Chr11:974073..974097 (25 bp)
GTGCTAGTTAACACTTTGACAAACA
LOC_Os11g02870
OsAffx.6971.1.S1_at--798--8912Chr11:974129..974153 (25 bp)
TGAGCATCAAACTACAGGGCCAGTT
LOC_Os11g02870
OsAffx.6971.1.S1_at--893--1992Chr11:974139..974163 (25 bp)
ACTACAGGGCCAGTTTATTTACCAG
LOC_Os11g02870
OsAffx.6971.1.S1_at--700--10851Chr11:974183..974207 (25 bp)
TTGGCCTTCAGTCACAGGAAATCAA
LOC_Os11g02870
OsAffx.6971.1.S1_at--822--6771Chr11:974214..974238 (25 bp)
GTTACTAGTGTACCACCAATCCAGC
LOC_Os11g02870
OsAffx.6971.1.S1_at--523--4511Chr11:974237..974261 (25 bp)
GCCGATGGCATCAGTTTCAACTACT
LOC_Os11g02870
OsAffx.6971.1.S1_at--1011--412Chr11:974276..974300 (25 bp)
ATCATCGGCACCAAGACAGATGGTC
LOC_Os11g02870
Target Sequence 
AAGAAACCCGCAGAGGCACAATCGTCCAGAAGTACAAGCTGAAGGTAGTTGCAGCCGATGAGGTTGGCTCAAGCTCTTCT
CCAGGCAATGCAGGTACTGCAGCTGGCTCAGGCGACAAAGGTAATGTCTCTCAAGATGGTGCAGTTGAAGATCTTGGTGA
AAATGGCAACCAAGAGCAATTACAGTTTAATAACTTTCAAGATCGGATCGACTACGCCGTCCAACATGCTCTGATCAACC
AATCCGGTGTGCTAGTTAACACTTTGACAAACATGGTGAAGACTGTGGTCGATGGTACGATAGCTGAGCATCAAACTACA
GGGCCAGTTTATTTACCAGGAGGTGTTTTTCCGAACTTTTGGCCTTCAGTCACAGGAAATCAACAGGGTGTTACTAGTGT
ACCACCAATCCAGCCGATGGCATCAGTTTCAACTACTGCACCAACTGCATCATCATCGGCACCAAGACAGATGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6971.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis