Browse Element(s) Details


Os.36521.1.S1_at

Description gb:AK121832.1
DB_XREF= gi:37991455
TID=Os.36521.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36521 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-112-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033099M19, full insert sequence.
FL= gb:AK063194.1 gb:AK121832.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0284011/11protein kinase family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02810NANA11+939526..941454hypothetical protein
LOC_Os11g02820Os.52568.1.S1_s_at11/1111+943551..944312expressed protein
LOC_Os11g02830Os.12636.1.S1_at11/1111+946566..951357serine/threonine-protein kinase NAK, putative, expressed
LOC_Os11g02830Os.54274.1.S1_at2/1111+946566..951357serine/threonine-protein kinase NAK, putative, expressed
LOC_Os11g02840Os.36521.1.S1_at11/1111+958797..960059protein kinase family protein, putative
LOC_Os11g02840Os.54274.1.S1_at4/1111+958797..960059protein kinase family protein, putative
LOC_Os11g02850NANA11+960665..961844hypothetical protein
LOC_Os11g02860OsAffx.18642.1.S1_at11/1111+968862..969385hypothetical protein
LOC_Os11g02870OsAffx.6971.1.S1_at11/1111+973629..974345hypothetical protein
LOC_Os11g02880Os.54901.1.S1_at1/1111+974834..982948retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36521.1.S1_at--191--9351Chr11:959787..959811 (25 bp)
TCGCGGTTGGCTTCGGCGACAGATC
LOC_Os11g02840
Os.36521.1.S1_at--258--3311Chr11:959699..959723 (25 bp)
CACACAGCTGCTCGACTGCTCAATA
LOC_Os11g02840
Os.36521.1.S1_at--838--3672Chr10:6525654..6525753 (24 bp)
CTTTGTTTCGTTTCCATGGCGGCAA
NONE
Os.36521.1.S1_at--1011--10291Chr11:959644..959668 (25 bp)
TTTCGTTTCCATGGCGGCAATCAAC
LOC_Os11g02840
Os.36521.1.S1_at--1162--8211Chr11:959629..959653 (25 bp)
GGCAATCAACAGAACCGGAGAGAGA
LOC_Os11g02840
Os.36521.1.S1_at--793--3231Chr11:959620..959644 (25 bp)
CAGAACCGGAGAGAGAACTAATTTT
LOC_Os11g02840
Os.36521.1.S1_at--613--2431Chr11:959550..959574 (25 bp)
AAAAGCCTCCTAGAAGGATCACCTC
LOC_Os11g02840
Os.36521.1.S1_at--73--10031Chr11:959540..959564 (25 bp)
TAGAAGGATCACCTCCACAATGTAT
LOC_Os11g02840
Os.36521.1.S1_at--636--2231Chr11:959524..959548 (25 bp)
ACAATGTATAAATGCTTCTCAAGGG
LOC_Os11g02840
Os.36521.1.S1_at--411--2771Chr11:959495..959519 (25 bp)
AAGACCCTCCTTATTTCTACATTGT
LOC_Os11g02840
Os.36521.1.S1_at--111--10211Chr11:959484..959508 (25 bp)
TATTTCTACATTGTGCATGACCTAA
LOC_Os11g02840
Target Sequence 
TCGCGGTTGGCTTCGGCGACAGATCTCCGGTTGTGGCGGTGGGGCCTGCGGGCGAAATCCGGCGGCGGTAGGGCTTGCAG
CACAACTCCACACAGCTGCTCGACTGCTCAATACTTCCCCTCCCCGGGCCTTCTTCCTCTTTGTTTCGTTTCCATGGCGG
CAATCAACAGAACCGGAGAGAGAACTAATTTTTTTTAATCCTTGTGGCCGGTCCTTAGCCATAAGGACGGCTCATCCAAA
AGCCTCCTAGAAGGATCACCTCCACAATGTATAAATGCTTCTCAAGGGGCTTAAGACCCTCCTTATTTCTACATTGTGCA
TGACCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36521.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis