Browse Element(s) Details


OsAffx.18642.1.S1_at

Description tigr:9639.m00191
TID=OsAffx.18642.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=protein kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0286011/11hypothetical protein
LOC_Os12g028101/11Protein kinase APK1B, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02820Os.52568.1.S1_s_at11/1111+943551..944312expressed protein
LOC_Os11g02830Os.12636.1.S1_at11/1111+946566..951357serine/threonine-protein kinase NAK, putative, expressed
LOC_Os11g02830Os.54274.1.S1_at2/1111+946566..951357serine/threonine-protein kinase NAK, putative, expressed
LOC_Os11g02840Os.36521.1.S1_at11/1111+958797..960059protein kinase family protein, putative
LOC_Os11g02840Os.54274.1.S1_at4/1111+958797..960059protein kinase family protein, putative
LOC_Os11g02850NANA11+960665..961844hypothetical protein
LOC_Os11g02860OsAffx.18642.1.S1_at11/1111+968862..969385hypothetical protein
LOC_Os11g02870OsAffx.6971.1.S1_at11/1111+973629..974345hypothetical protein
LOC_Os11g02880Os.54901.1.S1_at1/1111+974834..982948retrotransposon protein, putative, unclassified
LOC_Os11g02890OsAffx.20604.2.S1_at1/1111+985513..990125retrotransposon protein, putative, unclassified
LOC_Os11g02890OsAffx.10371.1.S1_at1/1111+985513..990125retrotransposon protein, putative, unclassified
LOC_Os11g02890OsAffx.22699.1.S1_x_at1/1111+985513..990125retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18642.1.S1_at--719--10752Chr12:993569..993592 (24 bp)
TTGAACTCGAGACCATCACAAAGAA
LOC_Os12g02810
OsAffx.18642.1.S1_at--311--4071Chr11:969305..969329 (25 bp)
CGAGACCATCACAAAGAACTTCCGT
LOC_Os11g02860
OsAffx.18642.1.S1_at--284--4831Chr11:969093..969117 (25 bp)
GCTCATGGCCGCCAGATCTGGTCAG
LOC_Os11g02860
OsAffx.18642.1.S1_at--284--1291Chr11:969080..969104 (25 bp)
AGATCTGGTCAGTCCGGCGACTCAG
LOC_Os11g02860
OsAffx.18642.1.S1_at--864--3291Chr11:969071..969095 (25 bp)
CAGTCCGGCGACTCAGAAACGAGGA
LOC_Os11g02860
OsAffx.18642.1.S1_at--1099--2372Chr11:969055..969079 (25 bp)
AAACGAGGAGAGTCGACAGTGCTCT
LOC_Os11g02860
OsAffx.18642.1.S1_at--36--6031Chr11:969048..969072 (25 bp)
GAGAGTCGACAGTGCTCTGGAAGAT
LOC_Os11g02860
OsAffx.18642.1.S1_at--920--9091Chr11:969036..969060 (25 bp)
TGCTCTGGAAGATGACGGTGGCTTC
LOC_Os11g02860
OsAffx.18642.1.S1_at--24--2811Chr11:969028..969052 (25 bp)
AAGATGACGGTGGCTTCGACGAGAA
LOC_Os11g02860
OsAffx.18642.1.S1_at--1089--1031Chr11:968935..968959 (25 bp)
AGGTGAGCGGACTGCAGGCGTTGCA
LOC_Os11g02860
OsAffx.18642.1.S1_at--1057--4271Chr11:968892..968916 (25 bp)
CCTGCATCCGCTCATCCAGGTTGAG
LOC_Os11g02860
Target Sequence 
TTGAACTCGAGACCATCACAAAGAACTTCCGTGCTGACTACGTTCTTGGTGAAGGAGGGTTTGGGACTGTTTACAAGGGC
TACATAGATGAGAATGTCAGGGTTGGTCTGAAGTCACTACCTGTTGCAGTCAAGGTGCTCACCAAAGATGGACATCAAGG
ACACAGAGAATGGCTTGAGCTCATGGCCGCCAGATCTGGTCAGTCCGGCGACTCAGAAACGAGGAGAGTCGACAGTGCTC
TGGAAGATGACGGTGGCTTCGACGAGAAGAGGAGGAAGATGGGAAACAATGAGAAGGAGAGGAAAGAGGATGGGGAAGGA
GCAAATGAGACAGTGGAGGTGAGCGGACTGCAGGCGTTGCATCGCGCGAGGCACCCGCCCCTGCATCCGCTCATCCAGGT
TGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18642.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis