Browse Element(s) Details


Os.54274.1.S1_at

Description gb:AK102976.1
DB_XREF= gi:32988185
TID=Os.54274.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54274 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033115M19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033115M19, full insert sequence.
FL= gb:AK102976.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g028404/11protein kinase family protein, putative
LOC_Os11g028302/11serine/threonine-protein kinase NAK, putative, expressed
LOC_Os12g028101/11Protein kinase APK1B, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02810NANA11+939526..941454hypothetical protein
LOC_Os11g02820Os.52568.1.S1_s_at11/1111+943551..944312expressed protein
LOC_Os11g02830Os.12636.1.S1_at11/1111+946566..951357serine/threonine-protein kinase NAK, putative, expressed
LOC_Os11g02830Os.54274.1.S1_at2/1111+946566..951357serine/threonine-protein kinase NAK, putative, expressed
LOC_Os11g02840Os.36521.1.S1_at11/1111+958797..960059protein kinase family protein, putative
LOC_Os11g02840Os.54274.1.S1_at4/1111+958797..960059protein kinase family protein, putative
LOC_Os11g02850NANA11+960665..961844hypothetical protein
LOC_Os11g02860OsAffx.18642.1.S1_at11/1111+968862..969385hypothetical protein
LOC_Os11g02870OsAffx.6971.1.S1_at11/1111+973629..974345hypothetical protein
LOC_Os11g02880Os.54901.1.S1_at1/1111+974834..982948retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54274.1.S1_at--64--5671Chr11:959003..959027 (25 bp)
GACTTATTGTTTGAACTTGAGACCA
LOC_Os11g02840
Os.54274.1.S1_at--803--991Chr11:958827..958851 (25 bp)
AGGATGGCTCGTGAGTTGCCAACTT
LOC_Os11g02840
Os.54274.1.S1_at--14--6072Chr11:958815..958839 (25 bp)
GAGTTGCCAACTTGTTCAATATTCA
LOC_Os11g02840
Os.54274.1.S1_at--45--6773Chr12:993380..993401 (22 bp)
GTTCAATATTCACTATGGTTGCCAT
LOC_Os12g02810
Os.54274.1.S1_at--300--10111Chr11:958789..958813 (25 bp)
TATGGTTGCCATCATAAGCCCACCA
NONE
Os.54274.1.S1_at--599--1711Chr11:958571..958594 (24 bp)
ACCACATGTGGTGAGCTTACGATGA
NONE
Os.54274.1.S1_at--53--10471Chr11:958555..958579 (25 bp)
TTACGATGACGACCACAGTTTGTTA
NONE
Os.54274.1.S1_at--96--1212Chr11:962498..962522 (25 bp)
AGTTTGTTAAGCATGCGAGCCGCAT
NONE
Os.54274.1.S1_at--92--4991Chr11:958518..958542 (25 bp)
GCATGCGGCAGATCGTGTGATTCAT
NONE
Os.54274.1.S1_at--964--3991Chr11:958505..958529 (25 bp)
CGTGTGATTCATTTTCTGTTGTGGA
NONE
Os.54274.1.S1_at--1118--491Chr11:958466..958490 (25 bp)
ATCGTATACCTATATTCTTCACTCA
NONE
Target Sequence 
GACTTATTGTTTGAACTTGAGACCATCACAAAAAGCTTCCGTGCTGACTACCTTCTTGGTGAAGGAGGGTTTGTGACTGT
TTACAAGGGCTACATAGATGAGAATGTCAGGGTTGGTCTGAAGTCACTACCTGTTGCAGTCAAGGTGCTCAACAAAGATG
GACATCAAGGACACAGAGGATGGCTCGTGAGTTGCCAACTTGTTCAATATTCACTATGGTTGCCATCATAAGCCCACCAC
ATGTGGTGAGCTTACGATGACGACCACAGTTTGTTAAGCATGCGAGCCGCATGCGGCAGATCGTGTGATTCATTTTCTGT
TGTGGAATGTATTATATATTATCGTATACCTATATTCTTCACTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54274.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis