Browse Element(s) Details


Os.32787.3.S1_s_at

Description gb:NM_191131.1
DB_XREF= gi:34909345
GEN=OSJNBb0021A09.19
TID=Os.32787.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.32787 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0702H08.16 (P0702H08.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0021A09.19 (OSJNBb0021A09.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3467011/11calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g5366011/11calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os02g379501/11calcineurin-like phosphoesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34620Os.37652.2.S1_at11/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34620Os.37652.1.S1_a_at11/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34620Os.37652.4.S1_x_at6/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34620Os.37652.4.S1_at2/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34630Os.54477.1.S1_at5/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34630OsAffx.20298.1.S1_x_at1/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34630OsAffx.20298.1.S1_at1/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34630OsAffx.28592.1.S1_at1/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34639NANA1+19433637..19434067NA
LOC_Os01g34650OsAffx.17536.1.S1_at1/111+19435496..19436383NA
LOC_Os01g34660Os.34335.1.S1_x_at9/111+19437755..19440162expressed protein
LOC_Os01g34660Os.34335.1.S1_at7/111+19437755..19440162expressed protein
LOC_Os01g34670Os.32787.2.S1_x_at11/111+19442093..19449256calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g34670Os.32787.3.S1_s_at11/111+19442093..19449256calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g34680Os.41057.1.S1_at10/111+19450258..19456039hypothetical protein
LOC_Os01g34680Os.55478.1.S1_at1/111+19450258..19456039hypothetical protein
LOC_Os01g34680Os.5306.1.S1_at1/111+19450258..19456039hypothetical protein
LOC_Os01g34690Os.8252.1.S1_s_at11/111+19456826..19460730expressed protein
LOC_Os01g34690Os.8252.1.S1_at4/111+19456826..19460730expressed protein
LOC_Os01g34690Os.37713.1.S1_at1/111+19456826..19460730expressed protein
LOC_Os01g34700Os.7133.1.S1_at11/111+19462649..19466740Dienelactone hydrolase family protein, expressed
LOC_Os01g34710OsAffx.31780.1.S1_at11/111+19469798..19475260transposon protein, putative, unclassified
LOC_Os01g34710OsAffx.31780.2.S1_s_at11/111+19469798..19475260transposon protein, putative, unclassified
LOC_Os01g34710OsAffx.31780.2.S1_x_at2/111+19469798..19475260transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32787.3.S1_s_at--493--3432Chr01:31158635..31158659 (25 bp)
CAGATTGAACTAATGGTGGAACCTA
LOC_Os01g53660
Os.32787.3.S1_s_at--1009--2532Chr01:31158642..31158666 (25 bp)
AACTAATGGTGGAACCTATGTATGT
LOC_Os01g53660
Os.32787.3.S1_s_at--112--2992Chr01:31158686..31158710 (25 bp)
AATGTGCTCTCATCCAGCACGTCAG
LOC_Os01g53660
Os.32787.3.S1_s_at--16--5112Chr01:31158702..31158726 (25 bp)
GCACGTCAGCTCAGGCGCTGTTGGA
LOC_Os01g53660
Os.32787.3.S1_s_at--1113--9652Chr01:31158707..31158731 (25 bp)
TCAGCTCAGGCGCTGTTGGAGAATT
LOC_Os01g53660
Os.32787.3.S1_s_at--934--8252Chr01:31158745..31158769 (25 bp)
GGCAGTCAATGAAAATGTCGATCCA
LOC_Os01g53660
Os.32787.3.S1_s_at--464--2292Chr01:31158757..31158781 (25 bp)
AAATGTCGATCCAGCCACCCAAGTT
LOC_Os01g53660
Os.32787.3.S1_s_at--1137--4393Chr02:22932166..22932189 (24 bp)
GCCACCCAAGTTACTGGCTCATCTA
LOC_Os02g37950
Os.32787.3.S1_s_at--280--452Chr01:31158790..31158814 (25 bp)
ATCTACCCCAGAACAGGGCACGGAT
LOC_Os01g53660
Os.32787.3.S1_s_at--394--2132Chr01:31158802..31158826 (25 bp)
ACAGGGCACGGATGTCATAGTAGAT
LOC_Os01g53660
Os.32787.3.S1_s_at--302--7992Chr01:31158811..31158835 (25 bp)
GGATGTCATAGTAGATGCTGAACAA
LOC_Os01g53660
Target Sequence 
CAGATTGAACTAATGGTGGAACCTATGTATGTGGATCACAATGATTCCAACAATGTGCTCTCATCCAGCACGTCAGCTCA
GGCGCTGTTGGAGAATTGTGAAGTAGCAGAGGCAGTCAATGAAAATGTCGATCCAGCCACCCAAGTTACTGGCTCATCTA
CCCCAGAACAGGGCACGGATGTCATAGTAGATGCTGAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32787.3.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis