Browse Element(s) Details


Os.54477.1.S1_at

Description gb:AK105280.1
DB_XREF= gi:32990489
TID=Os.54477.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54477 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-C02, full insert sequence.
FL= gb:AK105280.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g346305/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g406301/11Lysine Decarboxylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34580OsAffx.21290.1.S1_at11/111+19397755..19398063hypothetical protein
LOC_Os01g34590Os.55307.1.S1_at9/111+19399908..19400737expressed protein
LOC_Os01g34600OsAffx.21289.2.S1_at11/111+19404931..19405467hypothetical protein
LOC_Os01g34600OsAffx.21289.2.S1_x_at11/111+19404931..19405467hypothetical protein
LOC_Os01g34610Os.28769.1.S1_at11/111+19406097..19410322expressed protein
LOC_Os01g34610Os.28769.1.S2_at11/111+19406097..19410322expressed protein
LOC_Os01g34620Os.37652.2.S1_at11/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34620Os.37652.1.S1_a_at11/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34620Os.37652.4.S1_x_at6/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34620Os.37652.4.S1_at2/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34630Os.54477.1.S1_at5/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34630OsAffx.20298.1.S1_x_at1/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34630OsAffx.20298.1.S1_at1/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34630OsAffx.28592.1.S1_at1/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34639NANA1+19433637..19434067NA
LOC_Os01g34650OsAffx.17536.1.S1_at1/111+19435496..19436383NA
LOC_Os01g34660Os.34335.1.S1_x_at9/111+19437755..19440162expressed protein
LOC_Os01g34660Os.34335.1.S1_at7/111+19437755..19440162expressed protein
LOC_Os01g34670Os.32787.2.S1_x_at11/111+19442093..19449256calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g34670Os.32787.3.S1_s_at11/111+19442093..19449256calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g34680Os.41057.1.S1_at10/111+19450258..19456039hypothetical protein
LOC_Os01g34680Os.55478.1.S1_at1/111+19450258..19456039hypothetical protein
LOC_Os01g34680Os.5306.1.S1_at1/111+19450258..19456039hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0016831molecular_functioncarboxy-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54477.1.S1_at--800--1551Chr01:19423052..19423076 (25 bp)
AGCTTCACGTCCCATTGTGGCTGGA
LOC_Os01g34630
Os.54477.1.S1_at--156--4351Chr01:19422924..19422948 (25 bp)
CCAGGGCTATGTCAGTGTCGCAGTA
LOC_Os01g34630
Os.54477.1.S1_at--1032--891Chr01:19422890..19422914 (25 bp)
AGGCGATCAGATCTTCTTCTTGGAT
LOC_Os01g34630
Os.54477.1.S1_at--282--9871Chr01:19422835..19422859 (25 bp)
TACAGCACGGAGATCACTTCTTTCT
LOC_Os01g34630
Os.54477.1.S1_at--158--2311Chr01:19422767..19422791 (25 bp)
AAAGGCCTCCTGGAAGCGCTGTGAC
LOC_Os01g34630
Os.54477.1.S1_at--77--8311Chr01:19422669..19422693 (25 bp)
GGCTTATGTTATCCGAGTCCACTGT
NONE
Os.54477.1.S1_at--681--3331Chr01:19422650..19422674 (25 bp)
CACTGTCTGTTGTGTGGTGGCATCA
NONE
Os.54477.1.S1_at--155--212Chr01:19422620..19422644 (25 bp)
ATTTGCCTTGCCTGAACTTGTATTT
NONE
Os.54477.1.S1_at--849--4931Chr01:19422575..19422599 (25 bp)
GCTTGGTATTGGTCGTTATGCTGCA
NONE
Os.54477.1.S1_at--483--8171Chr01:19422500..19422524 (25 bp)
GGAACCATTCAACTCCTGTTTTAGG
NONE
Os.54477.1.S1_at--124--10071Chr01:19422479..19422503 (25 bp)
TAGGGTGGTGGTCTCTGATTTTCTC
NONE
Target Sequence 
AGCTTCACGTCCCATTGTGGCTGGACCAAACGAGTTCGAGGTATTCAAGGCCGACTTTGAGCAGTCTAGGTGGGTCAAGA
TGACAACATTGGGGGATGAGCAGGTGTTGTTTCTAGGGCGAAGGTGCTCCAGGGCTATGTCAGTGTCGCAGTATGGGATG
TCAGGCGATCAGATCTTCTTCTTGGATGACGAGGAGGAGAACCTCAAGCAGTATTATTACAGCACGGAGATCACTTCTTT
CTGTGTGTGTGATATGAGAGACGGTCAGGTCGACTCCCCTCTGCCAAAGGCCTCCTGGAAGCGCTGTGACGAGATGCGTC
CGGTGGCATGGCTATTCCCCCAGGACTGAAGCCAAGGTGTTAATGCAAATGCAAGCTGGGTGCGGCTTATGTTATCCGAG
TCCACTGTCTGTTGTGTGGTGGCATCATCAGTATTTGCCTTGCCTGAACTTGTATTTTGGGATCTCTATTTATCTGAGCT
TGGTATTGGTCGTTATGCTGCAAGGTAGTAGTAACCAATATTATCTGATATTGATCATGGTGGTCACATTATGGAACCAT
TCAACTCCTGTTTTAGGGTGGTGGTCTCTGATTTTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54477.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis