Browse Element(s) Details


OsAffx.20298.1.S1_at

Description gb:NM_196756.1
DB_XREF= gi:37534871
TID=OsAffx.20298.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0068N06.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g346301/11retrotransposon protein, putative, Ty1-copia subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34580OsAffx.21290.1.S1_at11/111+19397755..19398063hypothetical protein
LOC_Os01g34590Os.55307.1.S1_at9/111+19399908..19400737expressed protein
LOC_Os01g34600OsAffx.21289.2.S1_at11/111+19404931..19405467hypothetical protein
LOC_Os01g34600OsAffx.21289.2.S1_x_at11/111+19404931..19405467hypothetical protein
LOC_Os01g34610Os.28769.1.S1_at11/111+19406097..19410322expressed protein
LOC_Os01g34610Os.28769.1.S2_at11/111+19406097..19410322expressed protein
LOC_Os01g34620Os.37652.2.S1_at11/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34620Os.37652.1.S1_a_at11/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34620Os.37652.4.S1_x_at6/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34620Os.37652.4.S1_at2/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34630Os.54477.1.S1_at5/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34630OsAffx.20298.1.S1_x_at1/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34630OsAffx.20298.1.S1_at1/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34630OsAffx.28592.1.S1_at1/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34639NANA1+19433637..19434067NA
LOC_Os01g34650OsAffx.17536.1.S1_at1/111+19435496..19436383NA
LOC_Os01g34660Os.34335.1.S1_x_at9/111+19437755..19440162expressed protein
LOC_Os01g34660Os.34335.1.S1_at7/111+19437755..19440162expressed protein
LOC_Os01g34670Os.32787.2.S1_x_at11/111+19442093..19449256calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g34670Os.32787.3.S1_s_at11/111+19442093..19449256calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g34680Os.41057.1.S1_at10/111+19450258..19456039hypothetical protein
LOC_Os01g34680Os.55478.1.S1_at1/111+19450258..19456039hypothetical protein
LOC_Os01g34680Os.5306.1.S1_at1/111+19450258..19456039hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20298.1.S1_at--935--3091Chr10:16023823..16023847 (25 bp)
AATACTGCCTCAAATTCTAGCAAAG
NONE
OsAffx.20298.1.S1_at--338--9891Chr10:16023825..16023849 (25 bp)
TACTGCCTCAAATTCTAGCAAAGGG
NONE
OsAffx.20298.1.S1_at--568--4271Chr10:16023830..16023854 (25 bp)
CCTCAAATTCTAGCAAAGGGCCATT
NONE
OsAffx.20298.1.S1_at--635--3151Chr10:16023835..16023859 (25 bp)
AATTCTAGCAAAGGGCCATTCTCAG
NONE
OsAffx.20298.1.S1_at--966--7551NONE
GGGCCATTCTCAGGGGCAACACGGA
NONE
OsAffx.20298.1.S1_at--340--5151Chr10:16024549..16024573 (25 bp)
GCAACACGGACCATAGCTGGGCCGG
NONE
OsAffx.20298.1.S1_at--555--5111Chr10:16025021..16025042 (22 bp)
GCACTTGAGGCGAAGTTCAGGGCTC
NONE
OsAffx.20298.1.S1_at--495--2071Chr10:16025023..16025131 (25 bp)
ACTTGAGGCGAAGTTCAGGGCTCAT
NONE
OsAffx.20298.1.S1_at--970--891Chr10:16025028..16025136 (25 bp)
AGGCGAAGTTCAGGGCTCATGAGAT
NONE
OsAffx.20298.1.S1_at--210--10532Chr10:16025036..16025144 (25 bp)
TTCAGGGCTCATGAGATACAGATGC
NONE
OsAffx.20298.1.S1_at--1150--1191Chr10:16025187..16025211 (25 bp)
AGTTTGTGGCGGGAGGCATCATCGC
NONE
Target Sequence 
AATACTGCCTCAAATTCTAGCAAAGGGCCATTCTCAGGGGCAACACGGACCATAGCTGGGCCGGCCGACCCACCCTGCCC
AATGGTGGTGCTCGCCGACAACATAGTGGACGTGTACATGCACATGCCTTTAGGGAAGGAAATGTGGGATGCACTTGAGG
CGAAGTTCAGGGCTCATGAGATACAGATGCTGGCAAAGGAACTTGAGAACAACCGCTGTGAGTTGCCATACAAGTTTGTG
GCGGGAGGCATCATCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20298.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis