Browse Element(s) Details


Os.55307.1.S1_at

Description gb:AK107840.1
DB_XREF= gi:32993049
TID=Os.55307.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55307 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-H09, full insert sequence.
FL= gb:AK107840.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g345909/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34540NANA1+19380746..19381012hypothetical protein
LOC_Os01g34550OsAffx.21292.2.S1_at11/111+19383075..19384830hypothetical protein
LOC_Os01g34550OsAffx.20907.1.S1_at1/111+19383075..19384830hypothetical protein
LOC_Os01g34560Os.33316.1.S1_at11/111+19386083..19388014very-long-chain fatty acid condensing enzyme, putative, expressed
LOC_Os01g34570NANA1+19389270..19390814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g34580OsAffx.21290.1.S1_at11/111+19397755..19398063hypothetical protein
LOC_Os01g34590Os.55307.1.S1_at9/111+19399908..19400737expressed protein
LOC_Os01g34600OsAffx.21289.2.S1_at11/111+19404931..19405467hypothetical protein
LOC_Os01g34600OsAffx.21289.2.S1_x_at11/111+19404931..19405467hypothetical protein
LOC_Os01g34610Os.28769.1.S1_at11/111+19406097..19410322expressed protein
LOC_Os01g34610Os.28769.1.S2_at11/111+19406097..19410322expressed protein
LOC_Os01g34620Os.37652.2.S1_at11/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34620Os.37652.1.S1_a_at11/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34620Os.37652.4.S1_x_at6/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34620Os.37652.4.S1_at2/111+19416756..19421151glutaredoxin-related protein, expressed
LOC_Os01g34630Os.54477.1.S1_at5/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34630OsAffx.20298.1.S1_x_at1/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34630OsAffx.20298.1.S1_at1/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34630OsAffx.28592.1.S1_at1/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55307.1.S1_at--305--5651Chr01:19400281..19400305 (25 bp)
GACAGCGGTGGCGACAGTTCCCATC
LOC_Os01g34590
Os.55307.1.S1_at--53--6711Chr01:19400109..19400133 (25 bp)
GTTCGTCAAGATGATTTTCACAGGC
LOC_Os01g34590
Os.55307.1.S1_at--948--8371Chr01:19400068..19400092 (25 bp)
GGCGATGGCATACAGACGGATCATT
LOC_Os01g34590
Os.55307.1.S1_at--805--3571Chr01:19400047..19400071 (25 bp)
CATTCATCCGCATGAGAGGTTCCTT
LOC_Os01g34590
Os.55307.1.S1_at--116--6031Chr01:19400034..19400058 (25 bp)
GAGAGGTTCCTTTTTGGCCACCTGA
LOC_Os01g34590
Os.55307.1.S1_at--1145--6271Chr01:19399979..19400003 (25 bp)
GATGTTTACTCAGATGACACTCCGG
LOC_Os01g34590
Os.55307.1.S1_at--627--6311Chr01:19399967..19399991 (25 bp)
GATGACACTCCGGAAAATACTCTGT
LOC_Os01g34590
Os.55307.1.S1_at--1044--8151Chr01:19399956..19399980 (25 bp)
GGAAAATACTCTGTCGGTGCCTAAG
LOC_Os01g34590
Os.55307.1.S1_at--408--9451Chr01:19399947..19399971 (25 bp)
TCTGTCGGTGCCTAAGTGTACTTAT
LOC_Os01g34590
Os.55307.1.S1_at--200--91Chr01:19399908..19399932 (25 bp)
ATTCCAATTAATCATGAGAGGCCGC
NONE
Os.55307.1.S1_at--33--712Chr12:25290987..25291008 (22 bp)
ATGAGAGGCCGCAGCTAGCTTATCG
NONE
Target Sequence 
GACAGCGGTGGCGACAGTTCCCATCCCTCCTAGATCCGGCCGGAGGGAGGCCGGGGGAGAGCGGCAGCGGTGGTAGTTCC
CCTCCCTCCCAGATCTGGTCGGAGGGAGGGGGAGGGCGGCGGTGGCGGCGGATGTGGGTAGAGGCGCGGGTGGGGTGCGG
CGAATTTTTTTTGTTCGTCAAGATGATTTTCACAGGCGGGTGACTGGGTCGCAGGCGATGGCATACAGACGGATCATTCA
TCCGCATGAGAGGTTCCTTTTTGGCCACCTGAAAAAACTATTTTTCTAGTAGTGAGTGTAACGATGTTTACTCAGATGAC
ACTCCGGAAAATACTCTGTCGGTGCCTAAGTGTACTTATTATAGTAACTCCAAATTCCAATTAATCATGAGAGGCCGCAG
CTAGCTTATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55307.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis