Browse Element(s) Details


Os.33316.1.S1_at

Description gb:AK101002.1
DB_XREF= gi:32986211
TID=Os.33316.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33316 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative fatty acid condensing enzyme CUT1 (P0702H08.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023147G07, full insert sequence.
FL= gb:AK101002.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3456011/11very-long-chain fatty acid condensing enzyme, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34530OsAffx.21293.1.S1_at11/111+19360257..19363067transposon protein, putative, Mutator sub-class
LOC_Os01g34540NANA1+19380746..19381012hypothetical protein
LOC_Os01g34550OsAffx.21292.2.S1_at11/111+19383075..19384830hypothetical protein
LOC_Os01g34550OsAffx.20907.1.S1_at1/111+19383075..19384830hypothetical protein
LOC_Os01g34560Os.33316.1.S1_at11/111+19386083..19388014very-long-chain fatty acid condensing enzyme, putative, expressed
LOC_Os01g34570NANA1+19389270..19390814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g34580OsAffx.21290.1.S1_at11/111+19397755..19398063hypothetical protein
LOC_Os01g34590Os.55307.1.S1_at9/111+19399908..19400737expressed protein
LOC_Os01g34600OsAffx.21289.2.S1_at11/111+19404931..19405467hypothetical protein
LOC_Os01g34600OsAffx.21289.2.S1_x_at11/111+19404931..19405467hypothetical protein
LOC_Os01g34610Os.28769.1.S1_at11/111+19406097..19410322expressed protein
LOC_Os01g34610Os.28769.1.S2_at11/111+19406097..19410322expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000038biological_processvery-long-chain fatty acid metabolism
GO:0010025biological_processwax biosynthesis
GO:0030497biological_processfatty acid elongation
GO:0042335biological_processcuticle biosynthesis
GO:0008415molecular_functionacyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33316.1.S1_at--871--8291Chr01:19387481..19387505 (25 bp)
GGCTTCGACTGCAACAGCGTGGCGT
LOC_Os01g34560
Os.33316.1.S1_at--605--5751Chr01:19387619..19387643 (25 bp)
GACGTACAACGACCCTACATACTAT
LOC_Os01g34560
Os.33316.1.S1_at--533--3731Chr01:19387633..19387657 (25 bp)
CTACATACTATCTCGCAGCGATCAT
LOC_Os01g34560
Os.33316.1.S1_at--422--4971Chr01:19387679..19387703 (25 bp)
GCATGCATGCACGTAATTAAGCGCG
LOC_Os01g34560
Os.33316.1.S1_at--204--6891Chr01:19387727..19387751 (25 bp)
GTATATGTACCTTAATTCGGCGAAG
LOC_Os01g34560
Os.33316.1.S1_at--750--3151Chr01:19387740..19387764 (25 bp)
AATTCGGCGAAGTATATGTGGCATA
LOC_Os01g34560
Os.33316.1.S1_at--914--791Chr01:19387755..19387779 (25 bp)
ATGTGGCATACATATATACTCGGTA
LOC_Os01g34560
Os.33316.1.S1_at--862--291Chr01:19387770..19387794 (25 bp)
ATACTCGGTATTTTGTTACTACATG
LOC_Os01g34560
Os.33316.1.S1_at--762--5971Chr01:19387867..19387891 (25 bp)
GAGAACTTTGATACCGCAGTTAAGC
LOC_Os01g34560
Os.33316.1.S1_at--402--5031Chr01:19387882..19387906 (25 bp)
GCAGTTAAGCTAGTATACAGACCTT
LOC_Os01g34560
Os.33316.1.S1_at--601--51Chr01:19387963..19387987 (25 bp)
ATTGTTGTATTGTGCCCTCAGATGG
LOC_Os01g34560
Target Sequence 
GGCTTCGACTGCAACAGCGTGGCGTGGGAGTGCGTCAAGCCGGCGCCCGACGCCGACGGGCCCTGGGTCGACTGCATCCA
CCGCTACCCCGTCCAGCTCCCCGAAATCGCCNAAGACGTCTAAAAATGATCGATAAACGACGTACAACGACCCTACATAC
TATCTCGCAGCGATCATTAATTAAATTGGGATTTAATTGCATGCATGCACGTAATTAAGCGCGTACATATATATGCACGT
ATATATGTATATGTACCTTAATTCGGCGAAGTATATGTGGCATACATATATACTCGGTATTTTGTTACTACATGGGATAT
ATTNTGATTCGCATAGGGGACATACAGTACANTNTCTTCTTCNAAGATNTAGTANANNGAATAATTGAGAACTTTGATAC
CGCAGTTAAGCTAGTATACAGACCTTGATTAGTGGTTTGAATTATATTGATAAGTGTTGTTAGAGGTTGGGAACAATGTT
TGATTGTTGTATTGTGCCCTCAGATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33316.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis