Browse Element(s) Details


OsAffx.21293.1.S1_at

Description gb:NM_193171.1
DB_XREF= gi:34913425
GEN=B1129H01.16
TID=OsAffx.21293.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1129H01.16 (B1129H01.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3453011/11transposon protein, putative, Mutator sub-class
LOC_Os09g141603/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34480Os.11827.1.S1_a_at11/111+19336555..19341007NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g34490NANA1+19343199..19347398retrotransposon protein, putative, unclassified
LOC_Os01g34500OsAffx.11316.1.S1_at11/111+19349349..19350759hypothetical protein
LOC_Os01g34510OsAffx.11317.1.S1_at11/111+19352866..19354517hypothetical protein
LOC_Os01g34510OsAffx.7163.1.S1_at1/111+19352866..19354517hypothetical protein
LOC_Os01g34520OsAffx.23511.1.S1_at11/111+19359221..19359773hypothetical protein
LOC_Os01g34530OsAffx.21293.1.S1_at11/111+19360257..19363067transposon protein, putative, Mutator sub-class
LOC_Os01g34540NANA1+19380746..19381012hypothetical protein
LOC_Os01g34550OsAffx.21292.2.S1_at11/111+19383075..19384830hypothetical protein
LOC_Os01g34550OsAffx.20907.1.S1_at1/111+19383075..19384830hypothetical protein
LOC_Os01g34560Os.33316.1.S1_at11/111+19386083..19388014very-long-chain fatty acid condensing enzyme, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21293.1.S1_at--593--1651Chr01:19360904..19360928 (25 bp)
AGCCCCTACTATTCTGTGGAAATGT
LOC_Os01g34530
OsAffx.21293.1.S1_at--4--2291Chr01:19360885..19360909 (25 bp)
AAATGTTCAAGACAGCTTATGCCAA
LOC_Os01g34530
OsAffx.21293.1.S1_at--428--10111Chr01:19360868..19360892 (25 bp)
TATGCCAAAACTGTGCCACCAATGC
LOC_Os01g34530
OsAffx.21293.1.S1_at--113--5432Chr09:8384083..8384106 (24 bp)
GAACCAGTGTATGATCCAGATGCCC
LOC_Os09g14160
OsAffx.21293.1.S1_at--579--2452Chr09:8384152..8384176 (25 bp)
AACAATCCTGAACATGTGCCTAATG
LOC_Os09g14160
OsAffx.21293.1.S1_at--890--2511Chr01:19360461..19360539 (25 bp)
AACTATCCCTGCTGCTGTTAAACTT
LOC_Os01g34530
OsAffx.21293.1.S1_at--460--2511Chr01:19360441..19360465 (25 bp)
AACTTGGTGATCTGGGTGTTGCTGC
LOC_Os01g34530
OsAffx.21293.1.S1_at--599--4771Chr01:19360421..19360445 (25 bp)
GCTGCTAGTGATCAAGCTGCTGTTG
LOC_Os01g34530
OsAffx.21293.1.S1_at--856--4732Chr09:8384371..8384395 (25 bp)
GCTGTTCAGGCTTTGGCTAGTGATC
LOC_Os09g14160
OsAffx.21293.1.S1_at--928--7391Chr01:19360354..19360378 (25 bp)
GTGATCAACCATCTGGAAGCCCTAG
LOC_Os01g34530
OsAffx.21293.1.S1_at--342--5411Chr01:19360339..19360363 (25 bp)
GAAGCCCTAGACCAGTTACGAGGAG
LOC_Os01g34530
Target Sequence 
AGCCCCTACTATTCTGTGGAAATGTTCAAGACAGCTTATGCCAAAACTGTGCCACCAATGCCAGACAAGAGCCTATGGGA
GAAGGTGGATACTAGATTCAAGATGTGGCCACCAATACTGAAGAGATCAGCTGGTAGACCTAGGACAAGGAGGTTCATTG
GAGTTGAAGAAGGGGGGTCAGGAAAGAAAAGAAGGAGATACAACAGGTGCCATGGCTTTGGCCACCTACAGAAGACCTGC
AATGAACCAGTGTATGATCCAGATGCCCCTCCCCCAGCCCCACCCAAGCCTAAGAGAGTCAGAAAGAAGAAAAACAATCC
TGAACATGTGCCTAATGATGACAATACAACTATCCCTGCTGCTGTTAAACTTGGTGATCTGGGTGTTGCTGCTAGTGATC
AAGCTGCTGTTGGTGCTGTTGAAGCTGTTGCTGGTGCTGTTCAGGCTTTGGCTAGTGATCAACCATCTGGAAGCCCTAGA
CCAGTTACGAGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21293.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis