Browse Element(s) Details


OsAffx.20907.1.S1_at

Description gb:XM_354309.1
DB_XREF= gi:35190190
TID=OsAffx.20907.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g345501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34520OsAffx.23511.1.S1_at11/111+19359221..19359773hypothetical protein
LOC_Os01g34530OsAffx.21293.1.S1_at11/111+19360257..19363067transposon protein, putative, Mutator sub-class
LOC_Os01g34540NANA1+19380746..19381012hypothetical protein
LOC_Os01g34550OsAffx.21292.2.S1_at11/111+19383075..19384830hypothetical protein
LOC_Os01g34550OsAffx.20907.1.S1_at1/111+19383075..19384830hypothetical protein
LOC_Os01g34560Os.33316.1.S1_at11/111+19386083..19388014very-long-chain fatty acid condensing enzyme, putative, expressed
LOC_Os01g34570NANA1+19389270..19390814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g34580OsAffx.21290.1.S1_at11/111+19397755..19398063hypothetical protein
LOC_Os01g34590Os.55307.1.S1_at9/111+19399908..19400737expressed protein
LOC_Os01g34600OsAffx.21289.2.S1_at11/111+19404931..19405467hypothetical protein
LOC_Os01g34600OsAffx.21289.2.S1_x_at11/111+19404931..19405467hypothetical protein
LOC_Os01g34610Os.28769.1.S1_at11/111+19406097..19410322expressed protein
LOC_Os01g34610Os.28769.1.S2_at11/111+19406097..19410322expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20907.1.S1_at--826--7211Chr07:15654380..15654400 (21 bp)
GTCGAGATTGAAGATCCTAGGCCGT
NONE
OsAffx.20907.1.S1_at--288--6371NONE
GATCCTAGGCCGTATACGATGGGTA
NONE
OsAffx.20907.1.S1_at--801--1872Chr07:15654979..15655003 (25 bp)
ACGATGGGTATACCATACTCGTATA
NONE
OsAffx.20907.1.S1_at--380--9911Chr07:15654994..15655018 (25 bp)
TACTCGTATATTCCATTAGTCATAG
NONE
OsAffx.20907.1.S1_at--1083--3351Chr07:15657083..15657107 (25 bp)
CACCGCTCGTTTGGCCGATGGTCTT
NONE
OsAffx.20907.1.S1_at--1048--7131Chr07:15657103..15657127 (25 bp)
GTCTTGTTGATGAAACCCGTGCACA
NONE
OsAffx.20907.1.S1_at--350--7351Chr07:15657121..15657145 (25 bp)
GTGCACACAAGTCACCAGGCAGAGA
NONE
OsAffx.20907.1.S1_at--478--3491Chr07:15657136..15657160 (25 bp)
CAGGCAGAGACGTTGAGCAGACACA
NONE
OsAffx.20907.1.S1_at--1040--7011Chr07:15657163..15657187 (25 bp)
GTACAGGTGCTCACACTGAAGGCAT
NONE
OsAffx.20907.1.S1_at--323--5551Chr07:15657191..15657215 (25 bp)
GAAACTGATCTTGACGCGACGTGGG
NONE
OsAffx.20907.1.S1_at--383--6431Chr07:15657197..15657221 (25 bp)
GATCTTGACGCGACGTGGGCCTAAA
NONE
Target Sequence 
GTCGAGATTGAAGATCCTAGGCCGTATACGATGGGTATACCATACTCGTATATTCCATTAGTCATAGAGGATGAGGATGC
CGCCACCGCTCGTTTGGCCGATGGTCTTGTTGATGAAACCCGTGCACACAAGTCACCAGGCAGAGACGTTGAGCAGACAC
AATGTACAGGTGCTCACACTGAAGGCATTACGAAACTGATCTTGACGCGACGTGGGCCTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20907.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis