Browse Element(s) Details


OsAffx.23511.1.S1_at

Description tigr:9629.m03238
TID=OsAffx.23511.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3452011/11hypothetical protein
LOC_Os09g141705/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34480Os.11827.1.S1_a_at11/111+19336555..19341007NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g34490NANA1+19343199..19347398retrotransposon protein, putative, unclassified
LOC_Os01g34500OsAffx.11316.1.S1_at11/111+19349349..19350759hypothetical protein
LOC_Os01g34510OsAffx.11317.1.S1_at11/111+19352866..19354517hypothetical protein
LOC_Os01g34510OsAffx.7163.1.S1_at1/111+19352866..19354517hypothetical protein
LOC_Os01g34520OsAffx.23511.1.S1_at11/111+19359221..19359773hypothetical protein
LOC_Os01g34530OsAffx.21293.1.S1_at11/111+19360257..19363067transposon protein, putative, Mutator sub-class
LOC_Os01g34540NANA1+19380746..19381012hypothetical protein
LOC_Os01g34550OsAffx.21292.2.S1_at11/111+19383075..19384830hypothetical protein
LOC_Os01g34550OsAffx.20907.1.S1_at1/111+19383075..19384830hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23511.1.S1_at--585--4192Chr01:19359254..19359278 (25 bp)
CCCTCTCGTGTTGGCCGTGTTTGTG
LOC_Os01g34520
OsAffx.23511.1.S1_at--305--191Chr01:19359363..19359387 (25 bp)
ATTTCAATCGCAAGTTCTATCGCTG
LOC_Os01g34520
OsAffx.23511.1.S1_at--977--1211Chr01:19359375..19359399 (25 bp)
AGTTCTATCGCTGCCTGAGAGGACA
LOC_Os01g34520
OsAffx.23511.1.S1_at--985--5991Chr01:19359391..19359515 (25 bp)
GAGAGGACAAAATAGTGGTGCGCAA
LOC_Os01g34520
OsAffx.23511.1.S1_at--729--1071Chr01:19359504..19359528 (25 bp)
AGTGGTGCGCAATGTAAATTTTTCA
LOC_Os01g34520
OsAffx.23511.1.S1_at--994--7052Chr01:19359558..19359582 (25 bp)
GTCAAGGAGGGTGTTTTACATGCAT
LOC_Os01g34520
OsAffx.23511.1.S1_at--226--7752Chr01:19359567..19359591 (25 bp)
GGTGTTTTACATGCATGGACAGATT
LOC_Os01g34520
OsAffx.23511.1.S1_at--743--1252Chr01:19359587..19359611 (25 bp)
AGATTGCAATGCTCAGAGGACACAA
LOC_Os01g34520
OsAffx.23511.1.S1_at--856--1231Chr01:19359611..19359635 (25 bp)
AGTTGAGGTGCCAGATTCATTGAAT
LOC_Os01g34520
OsAffx.23511.1.S1_at--278--7012Chr01:19359700..19359724 (25 bp)
GTACAATTAGGGTGGCTGGGATTAT
LOC_Os01g34520
OsAffx.23511.1.S1_at--1150--8331Chr01:19359713..19359737 (25 bp)
GGCTGGGATTATACTTGTGACTGCA
LOC_Os01g34520
Target Sequence 
CCCTCTCGTGTTGGCCGTGTTTGTGAGGTAATGGAGCGGACATGCAAGAAGCAAGATAATTTCAATCGCAAGTTCTATCG
CTGCCTGAGAGGACAAAATAGTGGTGCGCAATGTAAATTTTTCATGTGGCAAGGGGAATATGCTGTTTGGTTGGTCAAGG
AGGGTGTTTTACATGCATGGACAGATTGCAATGCTCAGAGGACACAAGTTGAGGTGCCAGATTCATTGAATGCTTCAATG
GGAGGAGTAAATGATACAATTGAGAAGATGAGAAGTGAGCTGAAGAAGGCAATGAGTACAATTAGGGTGGCTGGGATTAT
ACTTGTGACTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23511.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis