Browse Element(s) Details


OsAffx.11317.1.S1_at

Description tigr:9629.m03237
TID=OsAffx.11317.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3451011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34460OsAffx.9057.3.S1_at11/111+19331291..19331875hypothetical protein
LOC_Os01g34470NANA1+19332274..19333839expressed protein
LOC_Os01g34480Os.11827.1.S1_a_at11/111+19336555..19341007NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g34490NANA1+19343199..19347398retrotransposon protein, putative, unclassified
LOC_Os01g34500OsAffx.11316.1.S1_at11/111+19349349..19350759hypothetical protein
LOC_Os01g34510OsAffx.11317.1.S1_at11/111+19352866..19354517hypothetical protein
LOC_Os01g34510OsAffx.7163.1.S1_at1/111+19352866..19354517hypothetical protein
LOC_Os01g34520OsAffx.23511.1.S1_at11/111+19359221..19359773hypothetical protein
LOC_Os01g34530OsAffx.21293.1.S1_at11/111+19360257..19363067transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11317.1.S1_at--659--131Chr01:19354461..19354485 (25 bp)
ATTAATATGGGCAACTCTTCCAGCA
LOC_Os01g34510
OsAffx.11317.1.S1_at--685--9751Chr01:19354459..19354483 (25 bp)
TAATATGGGCAACTCTTCCAGCAAC
LOC_Os01g34510
OsAffx.11317.1.S1_at--382--3091Chr01:19354458..19354482 (25 bp)
AATATGGGCAACTCTTCCAGCAACA
LOC_Os01g34510
OsAffx.11317.1.S1_at--684--271Chr01:19354457..19354481 (25 bp)
ATATGGGCAACTCTTCCAGCAACAA
LOC_Os01g34510
OsAffx.11317.1.S1_at--261--8651Chr01:19354454..19354478 (25 bp)
TGGGCAACTCTTCCAGCAACAAATA
LOC_Os01g34510
OsAffx.11317.1.S1_at--443--7611Chr01:19354453..19354477 (25 bp)
GGGCAACTCTTCCAGCAACAAATAA
LOC_Os01g34510
OsAffx.11317.1.S1_at--867--8231Chr01:19354452..19354476 (25 bp)
GGCAACTCTTCCAGCAACAAATAAT
LOC_Os01g34510
OsAffx.11317.1.S1_at--684--5151Chr01:19354451..19354475 (25 bp)
GCAACTCTTCCAGCAACAAATAATG
LOC_Os01g34510
OsAffx.11317.1.S1_at--509--2011Chr01:19354448..19354472 (25 bp)
ACTCTTCCAGCAACAAATAATGATG
LOC_Os01g34510
OsAffx.11317.1.S1_at--710--3271Chr01:19354438..19354462 (25 bp)
CAACAAATAATGATGCGGAAGAATT
LOC_Os01g34510
OsAffx.11317.1.S1_at--662--2991Chr01:19354430..19354454 (25 bp)
AATGATGCGGAAGAATTACGCAATA
LOC_Os01g34510
Target Sequence 
ATTAATATGGGCAACTCTTCCAGCAACAAATAATGATGCGGAAGAATTACGCAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11317.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis