Browse Element(s) Details


OsAffx.9057.3.S1_at

Description tigr:9629.m03232
TID=OsAffx.9057.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3446011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34430OsAffx.11314.1.S1_at10/111+19310796..19315354transcription factor, putative
LOC_Os01g34430Os.41072.1.S1_at4/111+19310796..19315354transcription factor, putative
LOC_Os01g34440OsAffx.9058.1.S1_at11/111+19317445..19318362hypothetical protein
LOC_Os01g34440Os.10191.1.S1_at1/111+19317445..19318362hypothetical protein
LOC_Os01g34450Os.36927.1.S1_at11/111+19319632..19321821expressed protein
LOC_Os01g34450OsAffx.29486.5.S1_s_at11/111+19319632..19321821expressed protein
LOC_Os01g34450Os.36927.2.S1_x_at11/111+19319632..19321821expressed protein
LOC_Os01g34450OsAffx.29486.3.S1_at9/111+19319632..19321821expressed protein
LOC_Os01g34450OsAffx.29486.2.S1_x_at4/111+19319632..19321821expressed protein
LOC_Os01g34460OsAffx.9057.3.S1_at11/111+19331291..19331875hypothetical protein
LOC_Os01g34470NANA1+19332274..19333839expressed protein
LOC_Os01g34480Os.11827.1.S1_a_at11/111+19336555..19341007NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g34490NANA1+19343199..19347398retrotransposon protein, putative, unclassified
LOC_Os01g34500OsAffx.11316.1.S1_at11/111+19349349..19350759hypothetical protein
LOC_Os01g34510OsAffx.11317.1.S1_at11/111+19352866..19354517hypothetical protein
LOC_Os01g34510OsAffx.7163.1.S1_at1/111+19352866..19354517hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9057.3.S1_at--91--4411Chr01:19331338..19331362 (25 bp)
GCCACATTTCATGCTCGGGTCAGTG
LOC_Os01g34460
OsAffx.9057.3.S1_at--598--9431Chr01:19331352..19331376 (25 bp)
TCGGGTCAGTGTGGCCCCTGCTAGC
LOC_Os01g34460
OsAffx.9057.3.S1_at--856--9071Chr01:19331370..19331394 (25 bp)
TGCTAGCCGACAACGGGAAGCGCAA
LOC_Os01g34460
OsAffx.9057.3.S1_at--307--3231Chr01:19331392..19331416 (25 bp)
CAAGAGGCGGTCATGCTGCGGCGGA
LOC_Os01g34460
OsAffx.9057.3.S1_at--974--8371Chr01:19331480..19331504 (25 bp)
GGCGATGGCGCCAGAGTCGTCTTCC
LOC_Os01g34460
OsAffx.9057.3.S1_at--986--9271Chr01:19331541..19331565 (25 bp)
TCCTGTGGCTTCTGGGCCAGGCGCA
LOC_Os01g34460
OsAffx.9057.3.S1_at--790--4411Chr01:19331556..19331580 (25 bp)
GCCAGGCGCATGAGCAGCCACGGTC
LOC_Os01g34460
OsAffx.9057.3.S1_at--1068--9311Chr01:19331594..19331618 (25 bp)
TCGCGGACAATGACGACCCGTCGGA
LOC_Os01g34460
OsAffx.9057.3.S1_at--210--9971Chr01:19331699..19331723 (25 bp)
TACCTGTCCGCTACCTGGGAAAAGA
LOC_Os01g34460
OsAffx.9057.3.S1_at--147--4131Chr01:19331707..19331731 (25 bp)
CGCTACCTGGGAAAAGACGATGAAG
LOC_Os01g34460
OsAffx.9057.3.S1_at--979--7711Chr01:19331819..19331843 (25 bp)
GGGGTATATATGAGCTCCACTATTT
LOC_Os01g34460
Target Sequence 
GCCACATTTCATGCTCGGGTCAGTGTGGCCCCTGCTAGCCGACAACGGGAAGCGCAAGAGGCGGTCATGCTGCGGCGGAC
GCATCACCACCCTCAATACCGCTACCTCCTCCGTCGAACTCCATCTCCGTCTCGAGCACGGTGGCGATGGCGCCAGAGTC
GTCTTCCTCGTCATCGGAGCCCTCGGCCGGGCGCTCCGACTCCTCCTGTGGCTTCTGGGCCAGGCGCATGAGCAGCCACG
GTCACCACCATGGAGGTCGCGGACAATGACGACCCGTCGGAGAGGGAGGGCGCCACGTCGCCAAGGTCACTGCCCGCCGT
CGGTTCGCTCCGCTTGCTCCACCGTTCTCCTCGTGACCACCTACCTGTCCGCTACCTGGGAAAAGACGATGAAGAAATGG
GAGAGGGAAGAAAGGAGGAGTGAGGATGAAGAAGAAAAGAGAGAGGGGAGAGGGAAGAAAGGAAGAGTGAGGATGACACG
TGGGGTATATATGAGCTCCACTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9057.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis