Browse Element(s) Details


Os.41072.1.S1_at

Description gb:NM_193162.1
DB_XREF= gi:34913407
GEN=B1074C08.27
TID=Os.41072.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41072 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1074C08.27 (B1074C08.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1074C08.27 (B1074C08.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g344304/11transcription factor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34390Os.17159.1.S1_at11/111+19288165..19295852protoheme IX farnesyltransferase family protein, expressed
LOC_Os01g34390Os.49333.1.S1_at1/111+19288165..19295852protoheme IX farnesyltransferase family protein, expressed
LOC_Os01g34400OsAffx.9060.1.S1_at11/111+19299540..19301255transposon protein, putative, Pong sub-class
LOC_Os01g34410Os.41074.1.S1_at3/111+19301812..19303778transposon protein, putative, Pong sub-class
LOC_Os01g34420Os.50056.1.S1_at11/111+19304271..19305166transcription factor, putative, expressed
LOC_Os01g34420Os.50056.1.S1_x_at11/111+19304271..19305166transcription factor, putative, expressed
LOC_Os01g34420OsAffx.23508.1.S1_at1/111+19304271..19305166transcription factor, putative, expressed
LOC_Os01g34420OsAffx.23508.2.S1_at1/111+19304271..19305166transcription factor, putative, expressed
LOC_Os01g34430OsAffx.11314.1.S1_at10/111+19310796..19315354transcription factor, putative
LOC_Os01g34430Os.41072.1.S1_at4/111+19310796..19315354transcription factor, putative
LOC_Os01g34440OsAffx.9058.1.S1_at11/111+19317445..19318362hypothetical protein
LOC_Os01g34440Os.10191.1.S1_at1/111+19317445..19318362hypothetical protein
LOC_Os01g34450Os.36927.1.S1_at11/111+19319632..19321821expressed protein
LOC_Os01g34450OsAffx.29486.5.S1_s_at11/111+19319632..19321821expressed protein
LOC_Os01g34450Os.36927.2.S1_x_at11/111+19319632..19321821expressed protein
LOC_Os01g34450OsAffx.29486.3.S1_at9/111+19319632..19321821expressed protein
LOC_Os01g34450OsAffx.29486.2.S1_x_at4/111+19319632..19321821expressed protein
LOC_Os01g34460OsAffx.9057.3.S1_at11/111+19331291..19331875hypothetical protein
LOC_Os01g34470NANA1+19332274..19333839expressed protein
LOC_Os01g34480Os.11827.1.S1_a_at11/111+19336555..19341007NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41072.1.S1_at--183--3251NONE
CAACCAACTTGCTCAAGATGCTTAA
NONE
Os.41072.1.S1_at--269--1291Chr01:19314967..19314991 (25 bp)
AGATGCTTAACCACATGTGACCTGG
LOC_Os01g34430
Os.41072.1.S1_at--786--8631Chr01:19314982..19315006 (25 bp)
TGTGACCTGGTTGTTAAATCCTTTT
LOC_Os01g34430
Os.41072.1.S1_at--323--3031Chr01:19314998..19315022 (25 bp)
AATCCTTTTCTCCAGAAGCATCTGA
LOC_Os01g34430
Os.41072.1.S1_at--625--5251Chr01:19315120..19315341 (25 bp)
GAATCTCCACCTATGTTTTTAGTTG
LOC_Os01g34430
Os.41072.1.S1_at--609--6651Chr01:19316001..19316022 (22 bp)
GTTGATACATCTGGAGAAGGCTTCT
NONE
Os.41072.1.S1_at--598--911Chr01:19316015..19316039 (25 bp)
AGGCTTCTCCAATGGATACCTTGAA
NONE
Os.41072.1.S1_at--312--1351Chr01:19316039..19316063 (25 bp)
AGAGATGTTGCGCAATTTTCCACTG
NONE
Os.41072.1.S1_at--660--3131Chr01:19316052..19316076 (25 bp)
AATTTTCCACTGCATGAAGATGGCC
NONE
Os.41072.1.S1_at--376--3091Chr01:19316079..19316103 (25 bp)
AATAAACCAGGCGATGCCCCTAACA
NONE
Os.41072.1.S1_at--672--6351Chr01:19316091..19316115 (25 bp)
GATGCCCCTAACAACACTGAAGCAA
NONE
Target Sequence 
CAACCAACTTGCTCAAGATGCTTAACCACATGTGACCTGGTTGTTAAATCCTTTTCTCCAGAAGCATCTGACAGACATAA
TGGAACTGAGGATCAAGCTGGTGGCAACAACTCTGATAGTGAGGATGCGGAGGATGATGAAGAGGAAGATAAAGAGTCAG
ATGGCTATGAATCTCCACCTATGTTTTTAGTTGATACATCTGGAGAAGGCTTCTCCAATGGATACCTTGAAGAGATGTTG
CGCAATTTTCCACTGCATGAAGATGGCCAAAATAAACCAGGCGATGCCCCTAACAACACTGAAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41072.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis