Browse Element(s) Details

Os.49333.1.S1_at

Description

gb:AK119453.1
DB_XREF= gi:37989076
TID=Os.49333.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49333 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-133-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-133-D12, full insert sequence.
FL= gb:AK119453.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g32720	11/11	Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g34390	1/11	protoheme IX farnesyltransferase family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g32660	Os.26886.3.S1_x_at	3/11	6	+	18994779..18997641	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32660	Os.26886.1.S1_x_at	2/11	6	+	18994779..18997641	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32674	OsAffx.27902.1.S1_at	11/11	6	+	19000926..19003322	hypothetical protein
LOC_Os06g32674	Os.26886.2.S1_s_at	8/11	6	+	19000926..19003322	hypothetical protein
LOC_Os06g32674	Os.26886.6.S1_s_at	7/11	6	+	19000926..19003322	hypothetical protein
LOC_Os06g32674	OsAffx.16467.1.S1_at	4/11	6	+	19000926..19003322	hypothetical protein
LOC_Os06g32690	OsAffx.4984.1.S1_at	11/11	6	+	19009761..19010533	hypothetical protein
LOC_Os06g32700	NA	NA	6	+	19014285..19014956	hypothetical protein
LOC_Os06g32710	OsAffx.27904.1.S1_at	9/11	6	+	19016037..19018120	hypothetical protein
LOC_Os06g32720	Os.49333.1.S1_at	11/11	6	+	19019420..19024459	Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os06g32730	OsAffx.27905.1.S1_at	11/11	6	+	19026101..19029662	Eukaryotic initiation factor, putative, expressed
LOC_Os06g32740	Os.10827.1.S1_x_at	8/11	6	+	19038412..19042904	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32740	Os.46055.2.S1_x_at	3/11	6	+	19038412..19042904	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32740	Os.20341.1.S1_s_at	1/11	6	+	19038412..19042904	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32750	NA	NA	6	+	19043643..19044137	hypothetical protein
LOC_Os06g32760	OsAffx.25936.7.S1_s_at	11/11	6	+	19047122..19049679	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32760	OsAffx.25936.1.S1_s_at	11/11	6	+	19047122..19049679	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32760	OsAffx.25936.2.S1_x_at	6/11	6	+	19047122..19049679	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32760	OsAffx.25936.5.S1_x_at	2/11	6	+	19047122..19049679	transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0001709	biological_process	cell fate determination
GO:0005634	cellular_component	nucleus
GO:0003676	molecular_function	nucleic acid binding
GO:0003723	molecular_function	RNA binding
GO:0004659	molecular_function	prenyltransferase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.49333.1.S1_at--425--745	1	Chr06:19023902..19023926 (25 bp)	GTGTCATTACTGCTAACCACAAGTG	LOC_Os06g32720
Os.49333.1.S1_at--1029--1005	3	Chr12:12279187..12279210 (24 bp)	TAGTAGACCCCGATGCTTTGCTGTG	NONE
Os.49333.1.S1_at--27--867	1	Chr06:19024051..19024075 (25 bp)	TGTGGCGTCGCCTAATGATATTTAT	LOC_Os06g32720
Os.49333.1.S1_at--1098--1047	1	Chr06:19024157..19024181 (25 bp)	TTACATGGGTGTTTTCTGACTCGCA	LOC_Os06g32720
Os.49333.1.S1_at--338--499	1	Chr06:19024179..19024203 (25 bp)	GCATGCAACTCCGTGCCGGAAGAAA	LOC_Os06g32720
Os.49333.1.S1_at--22--225	1	Chr06:19024201..19024225 (25 bp)	AAATTGAGGGTTTCCATGGGTGGCA	LOC_Os06g32720
Os.49333.1.S1_at--1161--751	1	Chr06:19024220..19024244 (25 bp)	GTGGCACCCTTAAGGACACGCTAGT	LOC_Os06g32720
Os.49333.1.S1_at--716--497	1	Chr06:19024316..19024340 (25 bp)	GCATCTATACACAGTTGGGCGTCCA	LOC_Os06g32720
Os.49333.1.S1_at--1059--835	1	Chr06:19024333..19024357 (25 bp)	GGCGTCCAGGGTCACAAGTCATGCA	LOC_Os06g32720
Os.49333.1.S1_at--893--543	1	Chr06:19024389..19024413 (25 bp)	GAACCTAGGTACTCTGATTCATTCA	LOC_Os06g32720
Os.49333.1.S1_at--600--41	1	Chr06:19024421..19024445 (25 bp)	ATCTTCTTACTATCTCACCTATTTT	LOC_Os06g32720

Target Sequence

GTGTCATTACTGCTAACCACAAGTGGCTTCAACTAATTAATTCTACTGGGGTCTAATATTTTTTTTGACCAGGGTCAGCG
ACGGTAAAATAGAGGGGGTATAACATGCTTGTTAAAAATCGTCGGGGTTAGTAGACCCCGATGCTTTGCTGTGGCGTCGC
CTAATGATATTTATGACATGACTATTATCCTTGAAGTATTTGTGTATTCGTTGCACTACTAAAGAAAATGTTTGTGCGGA
TGGCCAATAACCAGTTTACATGGGTGTTTTCTGACTCGCATGCAACTCCGTGCCGGAAGAAATTGAGGGTTTCCATGGGT
GGCACCCTTAAGGACACGCTAGTGAAAATTAATTTTCTAATTTTTATTCTTGTAGGTGCAAAAAAACTCGAAAAAATGTT
TTGTATTTCGGTATGCATCTATACACAGTTGGGCGTCCAGGGTCACAAGTCATGCAATTTTATGTGTGCGTGCAATTTAT
AGGATTAGAACCTAGGTACTCTGATTCATTCAGTCTGTAATCTTCTTACTATCTCACCTATTTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis