Browse Element(s) Details

OsAffx.27905.1.S1_at

Description

tigr:9634.m03065
TID=OsAffx.27905.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to eukaryotic initiation factor (iso)4f subunit p82-34 (eif-(iso)4fp82-34)
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g32730	11/11	Eukaryotic initiation factor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g32674	OsAffx.27902.1.S1_at	11/11	6	+	19000926..19003322	hypothetical protein
LOC_Os06g32674	Os.26886.2.S1_s_at	8/11	6	+	19000926..19003322	hypothetical protein
LOC_Os06g32674	Os.26886.6.S1_s_at	7/11	6	+	19000926..19003322	hypothetical protein
LOC_Os06g32674	OsAffx.16467.1.S1_at	4/11	6	+	19000926..19003322	hypothetical protein
LOC_Os06g32690	OsAffx.4984.1.S1_at	11/11	6	+	19009761..19010533	hypothetical protein
LOC_Os06g32700	NA	NA	6	+	19014285..19014956	hypothetical protein
LOC_Os06g32710	OsAffx.27904.1.S1_at	9/11	6	+	19016037..19018120	hypothetical protein
LOC_Os06g32720	Os.49333.1.S1_at	11/11	6	+	19019420..19024459	Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os06g32730	OsAffx.27905.1.S1_at	11/11	6	+	19026101..19029662	Eukaryotic initiation factor, putative, expressed
LOC_Os06g32740	Os.10827.1.S1_x_at	8/11	6	+	19038412..19042904	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32740	Os.46055.2.S1_x_at	3/11	6	+	19038412..19042904	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32740	Os.20341.1.S1_s_at	1/11	6	+	19038412..19042904	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32750	NA	NA	6	+	19043643..19044137	hypothetical protein
LOC_Os06g32760	OsAffx.25936.7.S1_s_at	11/11	6	+	19047122..19049679	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32760	OsAffx.25936.1.S1_s_at	11/11	6	+	19047122..19049679	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32760	OsAffx.25936.2.S1_x_at	6/11	6	+	19047122..19049679	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32760	OsAffx.25936.5.S1_x_at	2/11	6	+	19047122..19049679	transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006412	biological_process	protein biosynthesis
GO:0006413	biological_process	translational initiation
GO:0009615	biological_process	response to virus
GO:0005634	cellular_component	nucleus
GO:0005737	cellular_component	cytoplasm
GO:0003723	molecular_function	RNA binding
GO:0003743	molecular_function	translation initiation factor activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27905.1.S1_at--833--523	1	Chr06:19029155..19029179 (25 bp)	GAATAACTTGATCGATCCTCAGAAA	LOC_Os06g32730
OsAffx.27905.1.S1_at--294--11	1	Chr06:19029181..19029205 (25 bp)	ATTATGTGGTTTCAGCTTTTGGTCA	LOC_Os06g32730
OsAffx.27905.1.S1_at--1054--339	1	Chr06:19029193..19029217 (25 bp)	CAGCTTTTGGTCATCCCATTGAGAA	LOC_Os06g32730
OsAffx.27905.1.S1_at--1067--1007	1	Chr06:19029262..19029286 (25 bp)	TAGGATGCGGTATTTCTGAGATCAT	LOC_Os06g32730
OsAffx.27905.1.S1_at--1063--1045	1	Chr06:19029382..19029406 (25 bp)	TTACCCTCAATAGCCCTCAAGGAAG	LOC_Os06g32730
OsAffx.27905.1.S1_at--89--525	1	Chr06:19029441..19029465 (25 bp)	GAATAAGTGTTGAATCTCAGTTCCA	LOC_Os06g32730
OsAffx.27905.1.S1_at--184--375	1	Chr06:19029456..19029480 (25 bp)	CTCAGTTCCATTGTGCCTAGCTATT	LOC_Os06g32730
OsAffx.27905.1.S1_at--39--729	1	Chr06:19029468..19029492 (25 bp)	GTGCCTAGCTATTGTCTACTCCAAA	LOC_Os06g32730
OsAffx.27905.1.S1_at--228--715	1	Chr06:19029481..19029505 (25 bp)	GTCTACTCCAAAAGGCGTGTATCTA	LOC_Os06g32730
OsAffx.27905.1.S1_at--726--749	1	Chr06:19029520..19029544 (25 bp)	GTGGTGTGCCATGTAATGCTACTTA	LOC_Os06g32730
OsAffx.27905.1.S1_at--272--983	1	Chr06:19029586..19029610 (25 bp)	TAAACCCACGTTTGCGTTTGACTAT	LOC_Os06g32730

Target Sequence

GAATAACTTGATCGATCCTCAGAAAAATTATGTGGTTTCAGCTTTTGGTCATCCCATTGAGAATGAGAAGCAAACAAATT
CAGAAACATCCGTGAGAATCAGTGAAGTAGGATGCGGTATTTCTGAGATCATGGAGTTAATTGTTAATGCTGGTGCTGAG
GAAGGCAGTGATGAGCATTTCATTGCTACCCTATTATTTATTAAACCTGAATATAGGGAAATATTTCTTACCCTCAATAG
CCCTCAAGGAAGACTTCGGTGGCTAAAAAGGATGTGCAAAGTGAAGGAATAAGTGTTGAATCTCAGTTCCATTGTGCCTA
GCTATTGTCTACTCCAAAAGGCGTGTATCTATTAATGAGACCATTGTGGTGTGCCATGTAATGCTACTTAATTTTATTAA
TTTGCTCTTTTGTATATCAAGTAGTAGGTTTTAAACCCACGTTTGCGTTTGACTAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis