Browse Element(s) Details


OsAffx.27902.1.S1_at

Description tigr:9634.m03060
TID=OsAffx.27902.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3267411/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g32630Os.40855.5.S1_x_at6/116+18975073..18979695hypothetical protein
LOC_Os06g32630Os.40360.1.S1_at2/116+18975073..18979695hypothetical protein
LOC_Os06g32630Os.6227.1.S1_at1/116+18975073..18979695hypothetical protein
LOC_Os06g32630Os.40360.1.S1_x_at1/116+18975073..18979695hypothetical protein
LOC_Os06g32630OsAffx.15821.2.S1_at1/116+18975073..18979695hypothetical protein
LOC_Os06g32630OsAffx.22548.1.S1_at1/116+18975073..18979695hypothetical protein
LOC_Os06g32640OsAffx.23566.1.S1_at1/116+18982186..18982908hypothetical protein
LOC_Os06g32650OsAffx.27901.1.S1_at11/116+18984229..18984946hypothetical protein
LOC_Os06g32660Os.26886.3.S1_x_at3/116+18994779..18997641transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32660Os.26886.1.S1_x_at2/116+18994779..18997641transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32674OsAffx.27902.1.S1_at11/116+19000926..19003322hypothetical protein
LOC_Os06g32674Os.26886.2.S1_s_at8/116+19000926..19003322hypothetical protein
LOC_Os06g32674Os.26886.6.S1_s_at7/116+19000926..19003322hypothetical protein
LOC_Os06g32674OsAffx.16467.1.S1_at4/116+19000926..19003322hypothetical protein
LOC_Os06g32690OsAffx.4984.1.S1_at11/116+19009761..19010533hypothetical protein
LOC_Os06g32700NANA6+19014285..19014956hypothetical protein
LOC_Os06g32710OsAffx.27904.1.S1_at9/116+19016037..19018120hypothetical protein
LOC_Os06g32720Os.49333.1.S1_at11/116+19019420..19024459Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os06g32730OsAffx.27905.1.S1_at11/116+19026101..19029662Eukaryotic initiation factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27902.1.S1_at--1081--8631Chr06:19003158..19003182 (25 bp)
TGGGATGCTGCTCTAGCCGTCTCCT
LOC_Os06g32674
OsAffx.27902.1.S1_at--59--7991Chr06:19003160..19003184 (25 bp)
GGATGCTGCTCTAGCCGTCTCCTAC
LOC_Os06g32674
OsAffx.27902.1.S1_at--731--7231Chr06:19003194..19003218 (25 bp)
GTCGCCGCAACCTGCAAGCACATGG
LOC_Os06g32674
OsAffx.27902.1.S1_at--1119--4511Chr06:19003197..19003221 (25 bp)
GCCGCAACCTGCAAGCACATGGAGG
LOC_Os06g32674
OsAffx.27902.1.S1_at--1134--5151Chr06:19003200..19003224 (25 bp)
GCAACCTGCAAGCACATGGAGGCCG
LOC_Os06g32674
OsAffx.27902.1.S1_at--312--1771Chr06:19003203..19003227 (25 bp)
ACCTGCAAGCACATGGAGGCCGGCG
LOC_Os06g32674
OsAffx.27902.1.S1_at--462--7711Chr06:19003227..19003251 (25 bp)
GGGTGCAAGCTGCACCTCCTGACAG
LOC_Os06g32674
OsAffx.27902.1.S1_at--701--9031Chr06:19003237..19003261 (25 bp)
TGCACCTCCTGACAGCGTTGCGGGA
LOC_Os06g32674
OsAffx.27902.1.S1_at--390--9271Chr06:19003243..19003267 (25 bp)
TCCTGACAGCGTTGCGGGACTGCGT
LOC_Os06g32674
OsAffx.27902.1.S1_at--606--3391Chr06:19003249..19003273 (25 bp)
CAGCGTTGCGGGACTGCGTGGACAA
LOC_Os06g32674
OsAffx.27902.1.S1_at--1107--5711Chr06:19003260..19003284 (25 bp)
GACTGCGTGGACAAGCCGCGCTGGG
LOC_Os06g32674
Target Sequence 
TGGGATGCTGCTCTAGCCGTCTCCTACATCGCCGACGTCGCCGCAACCTGCAAGCACATGGAGGCCGGCGGGTGCAAGCT
GCACCTCCTGACAGCGTTGCGGGACTGCGTGGACAAGCCGCGCTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27902.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis