Browse Element(s) Details


OsAffx.27901.1.S1_at

Description tigr:9634.m03057
TID=OsAffx.27901.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3265011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g32619NANA6+18966200..18967712NA
LOC_Os06g32630Os.40855.5.S1_x_at6/116+18975073..18979695hypothetical protein
LOC_Os06g32630Os.40360.1.S1_at2/116+18975073..18979695hypothetical protein
LOC_Os06g32630Os.6227.1.S1_at1/116+18975073..18979695hypothetical protein
LOC_Os06g32630Os.40360.1.S1_x_at1/116+18975073..18979695hypothetical protein
LOC_Os06g32630OsAffx.15821.2.S1_at1/116+18975073..18979695hypothetical protein
LOC_Os06g32630OsAffx.22548.1.S1_at1/116+18975073..18979695hypothetical protein
LOC_Os06g32640OsAffx.23566.1.S1_at1/116+18982186..18982908hypothetical protein
LOC_Os06g32650OsAffx.27901.1.S1_at11/116+18984229..18984946hypothetical protein
LOC_Os06g32660Os.26886.3.S1_x_at3/116+18994779..18997641transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32660Os.26886.1.S1_x_at2/116+18994779..18997641transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32674OsAffx.27902.1.S1_at11/116+19000926..19003322hypothetical protein
LOC_Os06g32674Os.26886.2.S1_s_at8/116+19000926..19003322hypothetical protein
LOC_Os06g32674Os.26886.6.S1_s_at7/116+19000926..19003322hypothetical protein
LOC_Os06g32674OsAffx.16467.1.S1_at4/116+19000926..19003322hypothetical protein
LOC_Os06g32690OsAffx.4984.1.S1_at11/116+19009761..19010533hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27901.1.S1_at--726--5231Chr06:18984295..18984319 (25 bp)
GAATACTTCGACATCAATCAGTTGA
LOC_Os06g32650
OsAffx.27901.1.S1_at--217--411Chr06:18984311..18984334 (24 bp)
ATCAGTTGATTCCATCCGGTGGTGC
LOC_Os06g32650
OsAffx.27901.1.S1_at--712--6271Chr06:18984643..18984667 (25 bp)
GATGTATGGATCTGAGCGCCATCCC
LOC_Os06g32650
OsAffx.27901.1.S1_at--815--3491Chr06:18984700..18984724 (25 bp)
CATGGCTACTCCCTATTGTGTGCGC
LOC_Os06g32650
OsAffx.27901.1.S1_at--937--31Chr06:18984714..18984738 (25 bp)
ATTGTGTGCGCCAAAGCTTCGGAGA
LOC_Os06g32650
OsAffx.27901.1.S1_at--117--9511Chr06:18984787..18984811 (25 bp)
TCTCCCTCGCTACGCGAAATTACAA
LOC_Os06g32650
OsAffx.27901.1.S1_at--1148--4351Chr06:18984825..18984849 (25 bp)
CCACCAGCGGTACTGCATCAAGCAG
LOC_Os06g32650
OsAffx.27901.1.S1_at--57--3571Chr06:18984840..18984864 (25 bp)
CATCAAGCAGGGTGTGCGGTACCAT
LOC_Os06g32650
OsAffx.27901.1.S1_at--52--7732Chr06:18984850..18984874 (25 bp)
GGTGTGCGGTACCATCCAATCTCAG
LOC_Os06g32650
OsAffx.27901.1.S1_at--684--3052Chr06:18984867..18984891 (25 bp)
AATCTCAGCCATCCGATGAGGGCAT
LOC_Os06g32650
OsAffx.27901.1.S1_at--517--6131Chr06:18984884..18984908 (25 bp)
GAGGGCATATCAACGGTCAGGATTT
LOC_Os06g32650
Target Sequence 
GAATACTTCGACATCAATCAGTTGATTCCATCCGGTGGTGCCTCGTCCTGTTCCAAGCACTGCACGCCGGGGGAGCGCGC
CGTCGCCGTCCCCCAGCTCTACCGCCTGCAGCCGCGCAACGGGCTGCAGCGCCGTGTCAGCAGGGGGCGGCTCGGAGCGC
GCCGTTCCACCGCTGCCCACCGCCGACCATCGCCGCCCGCCGCCGCCGACCACCGCTGCCTGCCGCCGCCGACCACCGCC
GCCCAACGCCTATCGCCTCGAAGGGGACCACGAGCGGATGGAGGGATGTATGGATCTGAGCGCCATCCCTCCATCCCCTG
CGCTAGTTCAGCCGCCCACGGCATGGCTACTCCCTATTGTGTGCGCCAAAGCTTCGGAGAGATCGGGGAGAAGGAAACAG
AACCGAGAGAAGGAACAAAGAGACCCCTTCTCCCTCGCTACGCGAAATTACAATTTTACCCCCTCCCCACCAGCGGTACT
GCATCAAGCAGGGTGTGCGGTACCATCCAATCTCAGCCATCCGATGAGGGCATATCAACGGTCAGGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27901.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis