Browse Element(s) Details

OsAffx.4984.1.S1_at

Description

tigr:9634.m03061
TID=OsAffx.4984.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g32690	11/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g32650	OsAffx.27901.1.S1_at	11/11	6	+	18984229..18984946	hypothetical protein
LOC_Os06g32660	Os.26886.3.S1_x_at	3/11	6	+	18994779..18997641	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32660	Os.26886.1.S1_x_at	2/11	6	+	18994779..18997641	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32674	OsAffx.27902.1.S1_at	11/11	6	+	19000926..19003322	hypothetical protein
LOC_Os06g32674	Os.26886.2.S1_s_at	8/11	6	+	19000926..19003322	hypothetical protein
LOC_Os06g32674	Os.26886.6.S1_s_at	7/11	6	+	19000926..19003322	hypothetical protein
LOC_Os06g32674	OsAffx.16467.1.S1_at	4/11	6	+	19000926..19003322	hypothetical protein
LOC_Os06g32690	OsAffx.4984.1.S1_at	11/11	6	+	19009761..19010533	hypothetical protein
LOC_Os06g32700	NA	NA	6	+	19014285..19014956	hypothetical protein
LOC_Os06g32710	OsAffx.27904.1.S1_at	9/11	6	+	19016037..19018120	hypothetical protein
LOC_Os06g32720	Os.49333.1.S1_at	11/11	6	+	19019420..19024459	Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os06g32730	OsAffx.27905.1.S1_at	11/11	6	+	19026101..19029662	Eukaryotic initiation factor, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.4984.1.S1_at--909--921	1	Chr06:19009791..19009815 (25 bp)	TCCACAGAGAGCGCCAAGCAGTGCG	LOC_Os06g32690
OsAffx.4984.1.S1_at--1119--455	1	Chr06:19009835..19009859 (25 bp)	GCGCCGGTGCATGGAGGCCAACGCG	LOC_Os06g32690
OsAffx.4984.1.S1_at--1123--621	1	Chr06:19009848..19009872 (25 bp)	GAGGCCAACGCGGAGCACTTCAAGG	LOC_Os06g32690
OsAffx.4984.1.S1_at--212--261	1	Chr06:19009854..19009878 (25 bp)	AACGCGGAGCACTTCAAGGCCGACA	LOC_Os06g32690
OsAffx.4984.1.S1_at--823--413	1	Chr06:19009856..19009880 (25 bp)	CGCGGAGCACTTCAAGGCCGACATC	LOC_Os06g32690
OsAffx.4984.1.S1_at--377--799	1	Chr06:19009946..19009970 (25 bp)	GGATGAGGATGAATTCATCGCCAGT	LOC_Os06g32690
OsAffx.4984.1.S1_at--1016--797	1	Chr06:19009952..19009976 (25 bp)	GGATGAATTCATCGCCAGTAGCCTC	LOC_Os06g32690
OsAffx.4984.1.S1_at--496--901	1	Chr06:19009955..19009979 (25 bp)	TGAATTCATCGCCAGTAGCCTCAAG	LOC_Os06g32690
OsAffx.4984.1.S1_at--162--315	1	Chr06:19009957..19009981 (25 bp)	AATTCATCGCCAGTAGCCTCAAGTG	LOC_Os06g32690
OsAffx.4984.1.S1_at--610--961	1	Chr06:19009960..19009984 (25 bp)	TCATCGCCAGTAGCCTCAAGTGGAG	LOC_Os06g32690
OsAffx.4984.1.S1_at--20--933	1	Chr06:19009963..19009987 (25 bp)	TCGCCAGTAGCCTCAAGTGGAGGTG	LOC_Os06g32690

Target Sequence

TCCACAGAGAGCGCCAAGCAGTGCGCCAGGGGGACGGCGGCGCTGCGCCGGTGCATGGAGGCCAACGCGGAGCACTTCAA
GGCCGACATCCGCGCCATGGACGAGGGCCTCGACGAGGACCAGCGCCGCCGTGGGTCGCCGCCGGCGCCGGATGGGGATG
AGGATGAATTCATCGCCAGTAGCCTCAAGTGGAGGTG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis