Browse Element(s) Details


OsAffx.7163.1.S1_at

Description tigr:9639.m01906
TID=OsAffx.7163.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2033010/11expressed protein
LOC_Os06g199201/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g345101/11hypothetical protein
LOC_Os08g284701/11disease resistance protein RPM1 homolog, putative
LOC_Os04g077601/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g20290NANA11+11700854..11706670retrotransposon protein, putative, unclassified
LOC_Os11g20300Os.31312.1.S1_at8/1111+11706992..11710514retrotransposon protein, putative, unclassified
LOC_Os11g20300Os.31312.5.S1_x_at5/1111+11706992..11710514retrotransposon protein, putative, unclassified
LOC_Os11g20300Os.31312.2.S1_x_at4/1111+11706992..11710514retrotransposon protein, putative, unclassified
LOC_Os11g20310Os.15351.1.S1_at4/1111+11713992..11716967hypothetical protein
LOC_Os11g20320OsAffx.30285.1.S1_at2/1111+11718477..11719756hypothetical protein
LOC_Os11g20330Os.55142.1.S1_at11/1111+11722598..11734403expressed protein
LOC_Os11g20330OsAffx.7163.1.S1_at10/1111+11722598..11734403expressed protein
LOC_Os11g20330Os.53011.1.S1_x_at2/1111+11722598..11734403expressed protein
LOC_Os11g20330OsAffx.25473.1.S1_at1/1111+11722598..11734403expressed protein
LOC_Os11g20330Os.53011.1.S1_at1/1111+11722598..11734403expressed protein
LOC_Os11g20350OsAffx.7164.1.S1_at11/1111+11749749..11750090hypothetical protein
LOC_Os11g20360Os.52156.1.S1_at11/1111+11752798..11758127Leucine Rich Repeat family protein, expressed
LOC_Os11g20360Os.52156.1.S2_at10/1111+11752798..11758127Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7163.1.S1_at--456--5171Chr11:11730885..11730909 (25 bp)
GCAAGATACCATGAGTTCACCAGGT
LOC_Os11g20330
OsAffx.7163.1.S1_at--777--1211Chr11:11730436..11730896 (25 bp)
AGTTCACCAGGTTGATTCGAAGAAG
LOC_Os11g20330
OsAffx.7163.1.S1_at--541--1151Chr11:11730366..11730390 (25 bp)
AGTCGGACTGCGTATCGGCTGGATA
LOC_Os11g20330
OsAffx.7163.1.S1_at--1018--8331Chr11:11730350..11730374 (25 bp)
GGCTGGATACCATATCAGCTGGAAA
LOC_Os11g20330
OsAffx.7163.1.S1_at--574--371Chr11:11730311..11730335 (25 bp)
ATCAAGGTTGATGGAGCCGATGGCC
LOC_Os11g20330
OsAffx.7163.1.S1_at--879--16710Chr11:8678289..8678308 (20 bp)
AGCCGATGGCCGATACAGCCGATAT
NONE
OsAffx.7163.1.S1_at--207--6517Chr10:13097735..13097756 (22 bp)
GATATGGTATGACTTGGGCTCGCAT
NONE
OsAffx.7163.1.S1_at--941--3791Chr11:11730259..11730283 (25 bp)
CTCGCATGGGCCTGTATTGGGATAA
LOC_Os11g20330
OsAffx.7163.1.S1_at--983--3871Chr11:11730248..11730272 (25 bp)
CTGTATTGGGATAATCGTCATTGCC
LOC_Os11g20330
OsAffx.7163.1.S1_at--713--40119Chr11:11983138..11983162 (25 bp)
CGTCATTGCCAATTAGAGATAGAGC
NONE
OsAffx.7163.1.S1_at--122--6471NONE
GATAGAGCTCAGGATCAAATCAGTT
NONE
Target Sequence 
GCAAGATACCATGAGTTCACCAGGTTGATTCGAAGAAGGAAGAAGATCGAAGCAGATTTAGTGTGGAATCTAGTTGAATT
TGGAGTCGGACTGCGTATCGGCTGGATACCATATCAGCTGGAAATAAAGTGTGAGTTGATCAAGGTTGATGGAGCCGATG
GCCGATACAGCCGATATGGTATGACTTGGGCTCGCATGGGCCTGTATTGGGATAATCGTCATTGCCAATTAGAGATAGAG
CTCAGGATCAAATCAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7163.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis