Browse Element(s) Details


Os.52156.1.S1_at

Description gb:AK068828.1
DB_XREF= gi:32978853
TID=Os.52156.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52156 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013158B15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013158B15, full insert sequence.
FL= gb:AK068828.1 gb:AK065367.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2036011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g20330Os.55142.1.S1_at11/1111+11722598..11734403expressed protein
LOC_Os11g20330OsAffx.7163.1.S1_at10/1111+11722598..11734403expressed protein
LOC_Os11g20330Os.53011.1.S1_x_at2/1111+11722598..11734403expressed protein
LOC_Os11g20330OsAffx.25473.1.S1_at1/1111+11722598..11734403expressed protein
LOC_Os11g20330Os.53011.1.S1_at1/1111+11722598..11734403expressed protein
LOC_Os11g20350OsAffx.7164.1.S1_at11/1111+11749749..11750090hypothetical protein
LOC_Os11g20360Os.52156.1.S1_at11/1111+11752798..11758127Leucine Rich Repeat family protein, expressed
LOC_Os11g20360Os.52156.1.S2_at10/1111+11752798..11758127Leucine Rich Repeat family protein, expressed
LOC_Os11g20370OsAffx.31074.1.S1_at11/1111+11761586..11762300hypothetical protein
LOC_Os11g20384Os.49833.1.S1_at11/1111+11763776..11779422SacI homology domain containing protein, expressed
LOC_Os11g20384Os.49833.1.S2_at10/1111+11763776..11779422SacI homology domain containing protein, expressed
LOC_Os11g20384OsAffx.21285.1.S1_at3/1111+11763776..11779422SacI homology domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0005739cellular_componentmitochondrion
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52156.1.S1_at--209--7431Chr11:11755251..11755275 (25 bp)
GTGTTTATTGTGCTTGTGCTTTCTC
LOC_Os11g20360
Os.52156.1.S1_at--496--7331Chr11:11755260..11755284 (25 bp)
GTGCTTGTGCTTTCTCTTATATTAA
LOC_Os11g20360
Os.52156.1.S1_at--18--671Chr11:11755347..11755703 (25 bp)
ATGCAAGGTACATATCTCAAGCTGT
LOC_Os11g20360
Os.52156.1.S1_at--360--9171Chr11:11755724..11755748 (25 bp)
TGCCCATGTATCGAGCATTTTCTTT
LOC_Os11g20360
Os.52156.1.S1_at--841--2671Chr11:11755773..11755797 (25 bp)
AAGCTTTGAGAGGTCGGCATTTTTA
LOC_Os11g20360
Os.52156.1.S1_at--800--2011Chr11:11756041..11756065 (25 bp)
ACTAGAGAATGGAACCCTGATTGCC
LOC_Os11g20360
Os.52156.1.S1_at--1002--8171Chr11:11756051..11756075 (25 bp)
GGAACCCTGATTGCCATAAGATGTT
LOC_Os11g20360
Os.52156.1.S1_at--470--8491Chr11:11756076..11756100 (25 bp)
TGGCATTGCACCAACGATACTCAAT
LOC_Os11g20360
Os.52156.1.S1_at--667--6551Chr11:11756118..11756142 (25 bp)
GATTAGATCTACTGGCGAAGCTTCG
LOC_Os11g20360
Os.52156.1.S1_at--1022--6971Chr11:11756234..11756258 (25 bp)
GTACCTAGTGGAACGTTTCCTTCAT
LOC_Os11g20360
Os.52156.1.S1_at--663--3651Chr11:11756253..11756277 (25 bp)
CTTCATATCTTTCTGGTAAGGAACT
LOC_Os11g20360
Target Sequence 
GTGTTTATTGTGCTTGTGCTTTCTCTTATATTAATGGCTTCAAACAGAAGAAGCTGTCAGAGAGTTTTAGCAGAACAACA
GTTACTTCAAAAGCAAATGCAAGATAATTCGACATCAGGAATGTCAACTGAACTGCTAGTAAATGCAAGGTACATATCTC
AAGCTGTAAAATTAGGGACACAAATAATGCCCATGTATCGAGCATTTTCTTTGGAAGAGCTCAAGGAAGCAACAAAAAGC
TTTGAGAGGTCGGCATTTTTAGGCGAGGGGTCAATTGGAAAGCTGTACAAGGGAAAACTAGAGAATGGAACCCTGATTGC
CATAAGATGTTTGGCATTGCACCAACGATACTCAATAAGGAATCTAAAACTTCGATTAGATCTACTGGCGAAGCTTCGTC
ACCNAAATTTGGTTTGCCTCTTGGGGCACTGTATTGATGGCGAAGTTGATGAATCAAGTGTGAAAAGGGTTTTCCTTGTC
TATGAATATGTACCTAGTGGAACGTTTCCTTCATATCTTTCTGGTAAGGAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52156.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis