Browse Element(s) Details


Os.52156.1.S2_at

Description gb:AK065367.1
DB_XREF= gi:32975385
TID=Os.52156.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52156 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013158B15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013021L08, full insert sequence.
FL= gb:AK068828.1 gb:AK065367.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2036010/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g20330Os.55142.1.S1_at11/1111+11722598..11734403expressed protein
LOC_Os11g20330OsAffx.7163.1.S1_at10/1111+11722598..11734403expressed protein
LOC_Os11g20330Os.53011.1.S1_x_at2/1111+11722598..11734403expressed protein
LOC_Os11g20330OsAffx.25473.1.S1_at1/1111+11722598..11734403expressed protein
LOC_Os11g20330Os.53011.1.S1_at1/1111+11722598..11734403expressed protein
LOC_Os11g20350OsAffx.7164.1.S1_at11/1111+11749749..11750090hypothetical protein
LOC_Os11g20360Os.52156.1.S1_at11/1111+11752798..11758127Leucine Rich Repeat family protein, expressed
LOC_Os11g20360Os.52156.1.S2_at10/1111+11752798..11758127Leucine Rich Repeat family protein, expressed
LOC_Os11g20370OsAffx.31074.1.S1_at11/1111+11761586..11762300hypothetical protein
LOC_Os11g20384Os.49833.1.S1_at11/1111+11763776..11779422SacI homology domain containing protein, expressed
LOC_Os11g20384Os.49833.1.S2_at10/1111+11763776..11779422SacI homology domain containing protein, expressed
LOC_Os11g20384OsAffx.21285.1.S1_at3/1111+11763776..11779422SacI homology domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0005739cellular_componentmitochondrion
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52156.1.S2_at--365--10551NONE
TTCTTGATCCGGTTGAGCTGAGCAC
NONE
Os.52156.1.S2_at--766--1491Chr11:11757507..11757531 (25 bp)
AGCACCTCTTCGCAAGATTCTTTGT
LOC_Os11g20360
Os.52156.1.S2_at--205--411Chr11:11757563..11757587 (25 bp)
ATCAGTTGAATCTTCAGCCAGGCCT
LOC_Os11g20360
Os.52156.1.S2_at--591--7891Chr11:11757599..11757623 (25 bp)
GGTTCTCTGGAATCTGCAGTACGCT
LOC_Os11g20360
Os.52156.1.S2_at--369--1271Chr11:11757657..11757681 (25 bp)
AGATCAGAAGTTTCCTCGCAGACCT
LOC_Os11g20360
Os.52156.1.S2_at--956--4151Chr11:11757742..11757766 (25 bp)
CGCCGCACGTGCAAGCTAATTTGAT
LOC_Os11g20360
Os.52156.1.S2_at--578--691Chr11:11757785..11757809 (25 bp)
ATGACCAAACTGACTGATCTCTTCC
LOC_Os11g20360
Os.52156.1.S2_at--250--451Chr11:11757801..11757825 (25 bp)
ATCTCTTCCTGGGAGTAATCCTGCA
LOC_Os11g20360
Os.52156.1.S2_at--1050--6491Chr11:11757901..11757925 (25 bp)
GATATGGTCACGTTACGTCCTGTAA
LOC_Os11g20360
Os.52156.1.S2_at--852--10571Chr11:11757945..11757969 (25 bp)
TTCTAGCTTCCCATTGCTGTGAAAG
LOC_Os11g20360
Os.52156.1.S2_at--143--5571Chr11:11757965..11757989 (25 bp)
GAAAGCATCCCTATGAGCAGTTCTT
LOC_Os11g20360
Target Sequence 
TTCTTGATCCGGTTGAGCTGAGCACCTCTTCGCAAGATTCTTTGTCGATGGTGATTTCCATTACTGTCAAATGTTTATCA
GTTGAATCTTCAGCCAGGCCTTCGATCGAAGAGGTTCTCTGGAATCTGCAGTACGCTGCACAAGTCCAGGCAATATCTGA
TGGGGACCAGAGATCAGAAGTTTCCTCGCAGACCTGTTAGGCTAACTGAACATAAAACACCTTGGAGGTTATTGTCCATA
TCTGGGAAAAGACGGCGCCGCACGTGCAAGCTAATTTGATCTTGGTGTGCAGAAGAGAATGACCAAACTGACTGATCTCT
TCCTGGGAGTAATCCTGCATTTGCTGCTACTTCAACAGCATTTCTGACACATCAACAAGTTAATTAACATGTCAAATGCT
GTATGCTAAACACAGATATGGTCACGTTACGTCCTGTAAAGAGTTTTTTTTTTTCTCGATTCTAGCTTCCCATTGCTGTG
AAAGCATCCCTATGAGCAGTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52156.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis