Browse Element(s) Details


OsAffx.31074.1.S1_at

Description tigr:9639.m01910
TID=OsAffx.31074.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2037011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g20350OsAffx.7164.1.S1_at11/1111+11749749..11750090hypothetical protein
LOC_Os11g20360Os.52156.1.S1_at11/1111+11752798..11758127Leucine Rich Repeat family protein, expressed
LOC_Os11g20360Os.52156.1.S2_at10/1111+11752798..11758127Leucine Rich Repeat family protein, expressed
LOC_Os11g20370OsAffx.31074.1.S1_at11/1111+11761586..11762300hypothetical protein
LOC_Os11g20384Os.49833.1.S1_at11/1111+11763776..11779422SacI homology domain containing protein, expressed
LOC_Os11g20384Os.49833.1.S2_at10/1111+11763776..11779422SacI homology domain containing protein, expressed
LOC_Os11g20384OsAffx.21285.1.S1_at3/1111+11763776..11779422SacI homology domain containing protein, expressed
LOC_Os11g20400OsAffx.31892.5.S1_at3/1111+11786286..11790393retrotransposon protein, putative, unclassified, expressed
LOC_Os11g20400OsAffx.31892.1.S1_x_at2/1111+11786286..11790393retrotransposon protein, putative, unclassified, expressed
LOC_Os11g20400OsAffx.31892.5.S1_x_at2/1111+11786286..11790393retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31074.1.S1_at--981--1591Chr11:11761873..11761897 (25 bp)
AGCTCCATTGGCTTGTCCATTGTGA
LOC_Os11g20370
OsAffx.31074.1.S1_at--1088--10811Chr11:11761885..11761909 (25 bp)
TTGTCCATTGTGAACAACCGCTCGG
LOC_Os11g20370
OsAffx.31074.1.S1_at--717--2211Chr11:11761898..11761922 (25 bp)
ACAACCGCTCGGTGCAGTCGATGGC
LOC_Os11g20370
OsAffx.31074.1.S1_at--661--6231Chr11:11761917..11761941 (25 bp)
GATGGCGCGGTTGCACATCATGCCA
LOC_Os11g20370
OsAffx.31074.1.S1_at--808--4551Chr11:11761945..11761969 (25 bp)
GCGCCAGTGAGATTGGGCATCGCCA
LOC_Os11g20370
OsAffx.31074.1.S1_at--853--6091Chr11:11762014..11762038 (25 bp)
GAGTCACCGGTGACGAACACGCGGC
LOC_Os11g20370
OsAffx.31074.1.S1_at--329--2851Chr11:11762041..11762065 (25 bp)
AAGTCAGCAGCCTCGGTGAGCCAGC
LOC_Os11g20370
OsAffx.31074.1.S1_at--421--1551Chr11:11762070..11762094 (25 bp)
AGCATTGTCCAAGGTGTGTTCCCTA
LOC_Os11g20370
OsAffx.31074.1.S1_at--685--7471Chr11:11762083..11762107 (25 bp)
GTGTGTTCCCTAATCCAGTGGAGGA
LOC_Os11g20370
OsAffx.31074.1.S1_at--84--8551Chr11:11762101..11762125 (25 bp)
TGGAGGAAACCCGTCGCATCGTCAA
LOC_Os11g20370
OsAffx.31074.1.S1_at--17--8551Chr11:11762167..11762191 (25 bp)
TGGAGAACACGACGGCACTGGCATC
LOC_Os11g20370
Target Sequence 
AGCTCCATTGGCTTGTCCATTGTGAACAACCGCTCGGTGCAGTCGATGGCGCGGTTGCACATCATGCCACAGGCGCCAGT
GAGATTGGGCATCGCCAAGCCGGCGTGCATGGTGAGGTGGTGCGCTATGGTGCTGCCGTCCGAGTCACCGGTGACGAACA
CGCGGCCGAAGTCAGCAGCCTCGGTGAGCCAGCCATCAGCATTGTCCAAGGTGTGTTCCCTAATCCAGTGGAGGAAACCC
GTCGCATCGTCAACTGCGGTGGGAGGCGGTGCTTGAGGGCGAGGCGGTACCTGATGGAGAACACGACGGCACTGGCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31074.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis