Browse Element(s) Details


Os.49833.1.S2_at

Description gb:AK100761.1
DB_XREF= gi:32985970
TID=Os.49833.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49833 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023119H14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023119H14, full insert sequence.
FL= gb:AK100215.1 gb:AK111831.1 gb:AK100761.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2038410/11SacI homology domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g20350OsAffx.7164.1.S1_at11/1111+11749749..11750090hypothetical protein
LOC_Os11g20360Os.52156.1.S1_at11/1111+11752798..11758127Leucine Rich Repeat family protein, expressed
LOC_Os11g20360Os.52156.1.S2_at10/1111+11752798..11758127Leucine Rich Repeat family protein, expressed
LOC_Os11g20370OsAffx.31074.1.S1_at11/1111+11761586..11762300hypothetical protein
LOC_Os11g20384Os.49833.1.S1_at11/1111+11763776..11779422SacI homology domain containing protein, expressed
LOC_Os11g20384Os.49833.1.S2_at10/1111+11763776..11779422SacI homology domain containing protein, expressed
LOC_Os11g20384OsAffx.21285.1.S1_at3/1111+11763776..11779422SacI homology domain containing protein, expressed
LOC_Os11g20400OsAffx.31892.5.S1_at3/1111+11786286..11790393retrotransposon protein, putative, unclassified, expressed
LOC_Os11g20400OsAffx.31892.1.S1_x_at2/1111+11786286..11790393retrotransposon protein, putative, unclassified, expressed
LOC_Os11g20400OsAffx.31892.5.S1_x_at2/1111+11786286..11790393retrotransposon protein, putative, unclassified, expressed
LOC_Os11g20410NANA11+11790897..11791385retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g20420NANA11+11792062..11794570retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g20430OsAffx.18959.1.S1_at11/1111+11795183..11798247hypothetical protein
LOC_Os11g20430OsAffx.13772.1.S1_at1/1111+11795183..11798247hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0009826biological_processunidimensional cell growth
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0005794cellular_componentGolgi apparatus
GO:0004439molecular_functionphosphoinositide 5-phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49833.1.S2_at--106--3571Chr11:11765505..11765529 (25 bp)
CATCACATATCCTCAGTTAGTCGGG
LOC_Os11g20384
Os.49833.1.S2_at--180--6791Chr11:11765490..11765514 (25 bp)
GTTAGTCGGGATATGCCAACTCCAA
LOC_Os11g20384
Os.49833.1.S2_at--1145--10411NONE
TTATAGAGAATCACGCGTCCTTCCG
NONE
Os.49833.1.S2_at--723--8331Chr11:11764426..11764450 (25 bp)
GGCTGCCGTGATATTCTTGATAATG
LOC_Os11g20384
Os.49833.1.S2_at--355--9131Chr11:11764149..11764173 (25 bp)
TGCTGTCACTACTATGGTCTGGTTT
LOC_Os11g20384
Os.49833.1.S2_at--908--8271Chr11:11764117..11764141 (25 bp)
GGCATCACGCGTTATGTCAAAGCTA
LOC_Os11g20384
Os.49833.1.S2_at--37--251Chr11:11764025..11764049 (25 bp)
ATATACACACTCATGGTCGACTCAC
LOC_Os11g20384
Os.49833.1.S2_at--313--5711Chr11:11764007..11764031 (25 bp)
GACTCACCTTTCTGGGCATGCATGT
LOC_Os11g20384
Os.49833.1.S2_at--80--5011Chr11:11763988..11764012 (25 bp)
GCATGTGTGCTCTCAGTTTTGTATC
LOC_Os11g20384
Os.49833.1.S2_at--1020--10391Chr11:11763937..11763961 (25 bp)
TTTTGCACATGTTCTGACCATCACG
LOC_Os11g20384
Os.49833.1.S2_at--307--5851Chr11:11763922..11763946 (25 bp)
GACCATCACGGCTTTATATTTTCTT
LOC_Os11g20384
Target Sequence 
CATCACATATCCTCAGTTAGTCGGGATATGCCAACTCCAACCAAAGGACTTATAGAGAATCACGCGTCCTTCCGCCTTGC
TTTTGCTCTGCTTTTGGCTGCCGTGATATTCTTGATAATGTCACTGAGAAGAGCACGTAATGATGTTTTCCATTTGGTGC
TGTCACTACTATGGTCTGGTTTTTGCTTTGGCATCACGCGTTATGTCAAAGCTAACGGACGGAAGTTCACGAACCGTCCT
CGCTTTCACCTATCGCGCCATTGATGCGAACAAAAGGGATTATATACACACTCATGGTCGACTCACCTTTCTGGGCATGC
ATGTGTGCTCTCAGTTTTGTATCAAGTTTAACTTTCCCTCTTTGTAAGATTTTGCACATGTTCTGACCATCACGGCTTTA
TATTTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49833.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis