Browse Element(s) Details


Os.49833.1.S1_at

Description gb:AK111831.1
DB_XREF= gi:37988494
TID=Os.49833.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49833 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023119H14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023128H24, full insert sequence.
FL= gb:AK100215.1 gb:AK111831.1 gb:AK100761.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2038411/11SacI homology domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g20350OsAffx.7164.1.S1_at11/1111+11749749..11750090hypothetical protein
LOC_Os11g20360Os.52156.1.S1_at11/1111+11752798..11758127Leucine Rich Repeat family protein, expressed
LOC_Os11g20360Os.52156.1.S2_at10/1111+11752798..11758127Leucine Rich Repeat family protein, expressed
LOC_Os11g20370OsAffx.31074.1.S1_at11/1111+11761586..11762300hypothetical protein
LOC_Os11g20384Os.49833.1.S1_at11/1111+11763776..11779422SacI homology domain containing protein, expressed
LOC_Os11g20384Os.49833.1.S2_at10/1111+11763776..11779422SacI homology domain containing protein, expressed
LOC_Os11g20384OsAffx.21285.1.S1_at3/1111+11763776..11779422SacI homology domain containing protein, expressed
LOC_Os11g20400OsAffx.31892.5.S1_at3/1111+11786286..11790393retrotransposon protein, putative, unclassified, expressed
LOC_Os11g20400OsAffx.31892.1.S1_x_at2/1111+11786286..11790393retrotransposon protein, putative, unclassified, expressed
LOC_Os11g20400OsAffx.31892.5.S1_x_at2/1111+11786286..11790393retrotransposon protein, putative, unclassified, expressed
LOC_Os11g20410NANA11+11790897..11791385retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g20420NANA11+11792062..11794570retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g20430OsAffx.18959.1.S1_at11/1111+11795183..11798247hypothetical protein
LOC_Os11g20430OsAffx.13772.1.S1_at1/1111+11795183..11798247hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0009826biological_processunidimensional cell growth
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0005794cellular_componentGolgi apparatus
GO:0004439molecular_functionphosphoinositide 5-phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49833.1.S1_at--726--9811Chr11:11773703..11773890 (25 bp)
TACACGTAGGATAGGTACCCGGATG
LOC_Os11g20384
Os.49833.1.S1_at--633--10331Chr11:11773605..11773627 (23 bp)
TTTACAGCATCATATGTGCAAGTTC
LOC_Os11g20384
Os.49833.1.S1_at--291--2631Chr11:11773151..11773175 (25 bp)
AACCTAGTTTTGATGTTGTCAGAGT
LOC_Os11g20384
Os.49833.1.S1_at--554--1311Chr11:11772936..11773150 (25 bp)
AGAGGAGGCGCCTCGTGTACTTGAA
LOC_Os11g20384
Os.49833.1.S1_at--43--4571Chr11:11772929..11772951 (23 bp)
GCGCCTCGTGTACTTGAACGGCATT
LOC_Os11g20384
Os.49833.1.S1_at--828--5451Chr11:11772914..11772938 (25 bp)
GAACGGCATTTTCATGATTTACAAA
LOC_Os11g20384
Os.49833.1.S1_at--1089--4091Chr11:11770413..11770437 (25 bp)
CGAAGGTCGCCTGTATGAAAGATAT
LOC_Os11g20384
Os.49833.1.S1_at--24--3191Chr11:11770381..11770405 (25 bp)
CAATTGAGCCTATCTTGAGTGAAGA
LOC_Os11g20384
Os.49833.1.S1_at--411--5451Chr11:11770229..11770253 (25 bp)
GAACGCCTTTCTCAACTGTATGATC
LOC_Os11g20384
Os.49833.1.S1_at--169--831Chr11:11769238..11769262 (25 bp)
ATGGAAGAGCAGACCGGAACCGTTA
LOC_Os11g20384
Os.49833.1.S1_at--602--7211Chr11:11769202..11769226 (25 bp)
GTCGATTGTCTGGATCGTACTAATG
LOC_Os11g20384
Target Sequence 
TACACGTAGGATAGGTACCCGGATGTGGAGGCGAGGAGCTGATCCAGAGGGTTATGCTGCAAATTTTGTTGAATCAGAGC
AGATAATGCAATCGAAAGAATTTACAGCATCATATGTGCAAGTTCGAGGTTCTATGCCTTTTTTGTGGGAACAAATTGTT
GATTTGACATATAAACCTAGTTTTGATGTTGTCAGAGTAGAGGAGGCGCCTCGTGTACTTGAACGGCATTTTCATGATTT
ACAAAAGAAATATGGAGCTGTCGTGGCTGTTGATCTTGTCAATACACATGGTGGCGAAGGTCGCCTGTATGAAAGATATG
CAAAATCAATTGAGCCTATCTTGAGTGAAGATATAAGATTTGTGCATTTTGACTTCCATCAAATCTGTGGTCATATTCAC
TTTGAACGCCTTTCTCAACTGTATGATCAAATTGAGGATTATCTTAAGAAGCATAGGTACTTCCTTTTAAATAGTAAAGG
TGAGAAAATGGAAGAGCAGACCGGAACCGTTAGAACAAATTGTGTCGATTGTCTGGATCGTACTAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49833.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis