Browse Element(s) Details


Os.15351.1.S1_at

Description gb:AK099990.1
DB_XREF= gi:32985199
TID=Os.15351.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15351 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013131A13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013131A13, full insert sequence.
FL= gb:AK099990.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g203104/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g20270NANA11+11687790..11689952retrotransposon protein, putative, unclassified
LOC_Os11g20280NANA11+11696259..11696621hypothetical protein
LOC_Os11g20290NANA11+11700854..11706670retrotransposon protein, putative, unclassified
LOC_Os11g20300Os.31312.1.S1_at8/1111+11706992..11710514retrotransposon protein, putative, unclassified
LOC_Os11g20300Os.31312.5.S1_x_at5/1111+11706992..11710514retrotransposon protein, putative, unclassified
LOC_Os11g20300Os.31312.2.S1_x_at4/1111+11706992..11710514retrotransposon protein, putative, unclassified
LOC_Os11g20310Os.15351.1.S1_at4/1111+11713992..11716967hypothetical protein
LOC_Os11g20320OsAffx.30285.1.S1_at2/1111+11718477..11719756hypothetical protein
LOC_Os11g20330Os.55142.1.S1_at11/1111+11722598..11734403expressed protein
LOC_Os11g20330OsAffx.7163.1.S1_at10/1111+11722598..11734403expressed protein
LOC_Os11g20330Os.53011.1.S1_x_at2/1111+11722598..11734403expressed protein
LOC_Os11g20330OsAffx.25473.1.S1_at1/1111+11722598..11734403expressed protein
LOC_Os11g20330Os.53011.1.S1_at1/1111+11722598..11734403expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009933biological_processmeristem organization
GO:0016310biological_processphosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15351.1.S1_at--110--7333Chr11:11714211..11714235 (25 bp)
GTGCTTGGGAAGACATGTTGAATAC
LOC_Os11g20310
Os.15351.1.S1_at--270--311Chr11:11714042..11714066 (25 bp)
ATAGCGAACCATTTGCATCTTGCAG
LOC_Os11g20310
Os.15351.1.S1_at--551--212Chr11:11714032..11714056 (25 bp)
ATTTGCATCTTGCAGCTGCGCTGAA
LOC_Os11g20310
Os.15351.1.S1_at--1080--1591Chr11:11714019..11714043 (25 bp)
AGCTGCGCTGAACTGGTTTGAAGAT
LOC_Os11g20310
Os.15351.1.S1_at--219--8572Chr11:11713977..11714001 (25 bp)
TGGTTTGTAATGAGCTCTTTCCACT
NONE
Os.15351.1.S1_at--348--5271Chr11:11713930..11713954 (25 bp)
GAATGCCAATCATAGCATCCACTAA
NONE
Os.15351.1.S1_at--713--1111Chr11:11713891..11713915 (25 bp)
AGTGTTTGTCCTTTTTGTTGATGAA
NONE
Os.15351.1.S1_at--701--10351Chr11:11713845..11713869 (25 bp)
TTTATTGTTCATCTTTGTTGGTGTG
NONE
Os.15351.1.S1_at--638--131Chr11:11713811..11713835 (25 bp)
ATTAAGCCACCTAATGGATTCACAA
NONE
Os.15351.1.S1_at--921--7911Chr11:11713796..11713820 (25 bp)
GGATTCACAAGGACTACTTATACTT
NONE
Os.15351.1.S1_at--861--9531Chr11:11713720..11713744 (25 bp)
TCTACTATCTAACCATTTTATGCAG
NONE
Target Sequence 
GTGCTTGGGAAGACATGTTGAATACTGAGCATGCAGTGNCCTTCTGAAAGATAAAACATGTTTACNCGCTTGAATAGCGA
ACCATTTGCATCTTGCAGCTGCGCTGAACTGGTTTGAAGATGTTTGCAGACAGAATTGTGGTTTGTAATGAGCTCTTTCC
ACTNGTAGTCCTTTATGGTGGAGAAGAATGCCAATCATAGCATCCACTAAATGACCCNTTNGAAAGTGTTTGTCCTTTTT
GTTGATGAAAATTATAGCCCAATTCACTTTTTTATTGTTCATCTTTGTTGGTGTGTTGTCTTCTATTAAGCCACCTAATG
GATTCACAAGGACTACTTATACTTTATTGTACTCNGNNNATTAAACAAATGTAGNCCGTATTTATCAAAATATTATCTAC
TATCTAACCATTTTATGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15351.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis