Browse Element(s) Details


Os.8252.1.S1_s_at

Description gb:AK102373.1
DB_XREF= gi:32987582
TID=Os.8252.1
CNT=28
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.8252 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0702H08.18 (P0702H08.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033091N05, full insert sequence.
FL= gb:AK060989.1 gb:AK102373.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5519011/11expressed protein
LOC_Os01g3469011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55140OsAffx.2336.2.S1_at10/111+32051125..32052091hypothetical protein
LOC_Os01g55150Os.55684.1.S1_at10/111+32054863..32057220bZIP transcription factor family protein, expressed
LOC_Os01g55150OsAffx.9432.1.S1_at8/111+32054863..32057220bZIP transcription factor family protein, expressed
LOC_Os01g55160Os.34913.1.S1_at11/111+32058836..32059797expressed protein
LOC_Os01g55170Os.50721.1.S1_at11/111+32064904..32069629La domain containing protein, expressed
LOC_Os01g55170Os.9803.1.S1_a_at10/111+32064904..32069629La domain containing protein, expressed
LOC_Os01g55180OsAffx.11610.2.S1_at11/111+32070709..32075429hypothetical protein
LOC_Os01g55190Os.8252.1.S1_s_at11/111+32076028..32080215expressed protein
LOC_Os01g55190Os.8252.1.S1_at11/111+32076028..32080215expressed protein
LOC_Os01g55190Os.37713.1.S1_at1/111+32076028..32080215expressed protein
LOC_Os01g55200Os.33391.1.S1_at11/111+32088071..32090735Potassium channel KAT1, putative, expressed
LOC_Os01g55200Os.33391.2.S1_x_at11/111+32088071..32090735Potassium channel KAT1, putative, expressed
LOC_Os01g55210OsAffx.23798.2.S1_at11/111+32091409..32091951F-box domain containing protein
LOC_Os01g55210OsAffx.23798.1.S1_s_at11/111+32091409..32091951F-box domain containing protein
LOC_Os01g55220NANA1+32093478..32093690hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8252.1.S1_s_at--103--7672Chr01:32079623..32079647 (25 bp)
GGGATTCATGCCAGCCACCAATGGC
LOC_Os01g55190
Os.8252.1.S1_s_at--55--8352Chr01:32079645..32079669 (25 bp)
GGCTGTCATGGCATTCGCAGGTGAC
LOC_Os01g55190
Os.8252.1.S1_s_at--621--9352Chr01:32079659..32079683 (25 bp)
TCGCAGGTGACCAGGCCCAGAACTT
LOC_Os01g55190
Os.8252.1.S1_s_at--148--1432Chr01:32079677..32079701 (25 bp)
AGAACTTCCACTACTCGCCCATGGG
LOC_Os01g55190
Os.8252.1.S1_s_at--927--1992Chr01:32079689..32079713 (25 bp)
ACTCGCCCATGGGTAATGCCACAAG
LOC_Os01g55190
Os.8252.1.S1_s_at--726--7832Chr01:32079700..32079724 (25 bp)
GGTAATGCCACAAGCCAGGCTGCGA
LOC_Os01g55190
Os.8252.1.S1_s_at--972--2652Chr01:32079711..32079735 (25 bp)
AAGCCAGGCTGCGAATGTGACATTC
LOC_Os01g55190
Os.8252.1.S1_s_at--18--792Chr01:32079725..32079749 (25 bp)
ATGTGACATTCACAGCACGAGCTGA
LOC_Os01g55190
Os.8252.1.S1_s_at--359--9852Chr01:32079781..32079805 (25 bp)
TACAACACGAGAAGCGACGACCACA
LOC_Os01g55190
Os.8252.1.S1_s_at--901--2152Chr01:32079803..32079827 (25 bp)
ACAGCTCGCTCTGTGGGCCAGTGAT
LOC_Os01g55190
Os.8252.1.S1_s_at--335--4352Chr01:32079820..32079844 (25 bp)
CCAGTGATCGATGATGTGCGCGTCT
LOC_Os01g55190
Target Sequence 
GGGATTCATGCCAGCCACCAATGGCTGTCATGGCATTCGCAGGTGACCAGGCCCAGAACTTCCACTACTCGCCCATGGGT
AATGCCACAAGCCAGGCTGCGAATGTGACATTCACAGCACGAGCTGAGAGGACGCGGNTAGCGTTCTACAGTGTGTATTA
CAACACGAGAAGCGACGACCACAGCTCGCTCTGTGGGCCAGTGATCGATGATGTGCGCGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8252.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis