Browse Element(s) Details


Os.33391.2.S1_x_at

Description gb:NM_191289.1
DB_XREF= gi:34909661
GEN=OJ1414_E05.8
TID=Os.33391.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.33391 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative potassium channel (OJ1414_E05.8), mRNA.
PROD=putative potassium channel
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5520011/11Potassium channel KAT1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55170Os.50721.1.S1_at11/111+32064904..32069629La domain containing protein, expressed
LOC_Os01g55170Os.9803.1.S1_a_at10/111+32064904..32069629La domain containing protein, expressed
LOC_Os01g55180OsAffx.11610.2.S1_at11/111+32070709..32075429hypothetical protein
LOC_Os01g55190Os.8252.1.S1_s_at11/111+32076028..32080215expressed protein
LOC_Os01g55190Os.8252.1.S1_at11/111+32076028..32080215expressed protein
LOC_Os01g55190Os.37713.1.S1_at1/111+32076028..32080215expressed protein
LOC_Os01g55200Os.33391.1.S1_at11/111+32088071..32090735Potassium channel KAT1, putative, expressed
LOC_Os01g55200Os.33391.2.S1_x_at11/111+32088071..32090735Potassium channel KAT1, putative, expressed
LOC_Os01g55210OsAffx.23798.2.S1_at11/111+32091409..32091951F-box domain containing protein
LOC_Os01g55210OsAffx.23798.1.S1_s_at11/111+32091409..32091951F-box domain containing protein
LOC_Os01g55220NANA1+32093478..32093690hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0009860biological_processpollen tube growth
GO:0005886cellular_componentplasma membrane
GO:0005242molecular_functioninward rectifier potassium channel activity
GO:0005267molecular_functionpotassium channel activity
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33391.2.S1_x_at--871--10071Chr01:32089616..32089639 (24 bp)
TAGGGATGTGGTTCAGGCCGCCTCA
LOC_Os01g55200
Os.33391.2.S1_x_at--602--5211Chr01:32089640..32089664 (25 bp)
GAATTCGCGGCGAGGAACCAGCTGC
LOC_Os01g55200
Os.33391.2.S1_x_at--1058--1291Chr01:32089683..32089707 (25 bp)
AGATGCTGAACCACATATGCCTCCG
LOC_Os01g55200
Os.33391.2.S1_x_at--456--7031Chr01:32089708..32089732 (25 bp)
GTACAAGACCGATGGCCTCAAGCAG
LOC_Os01g55200
Os.33391.2.S1_x_at--719--5291Chr01:32089756..32089780 (25 bp)
GAAGGCGATGCGATCCAGCATTTCT
LOC_Os01g55200
Os.33391.2.S1_x_at--774--10551Chr01:32089790..32089814 (25 bp)
TTCTTCCGGGTTGTTCAAGGAGCCT
LOC_Os01g55200
Os.33391.2.S1_x_at--562--8071Chr01:32089808..32089832 (25 bp)
GGAGCCTACCTGTTCAAGGGAGTCT
LOC_Os01g55200
Os.33391.2.S1_x_at--614--9251Chr01:32089832..32089856 (25 bp)
TCCTCAAGGTTCATCCAGCAGTTGG
LOC_Os01g55200
Os.33391.2.S1_x_at--745--1291Chr01:32089942..32089966 (25 bp)
AGATGCAAGCAGAGTACTTCGCCCC
LOC_Os01g55200
Os.33391.2.S1_x_at--626--5271Chr01:32089988..32090012 (25 bp)
GAATGACAGCCCATCGGACTTGTAT
LOC_Os01g55200
Os.33391.2.S1_x_at--223--5691Chr01:32090004..32090028 (25 bp)
GACTTGTATCTTCTTGTATCCGGAG
LOC_Os01g55200
Target Sequence 
TAGGGATGTGGTTCAGGCCGCCTCAGAATTCGCGGCGAGGAACCAGCTGCCGCAGCAAATAGAGGAGCAGATGCTGAACC
ACATATGCCTCCGGTACAAGACCGATGGCCTCAAGCAGCAGGAGACGCTAGACGTCCTCCCGAAGGCGATGCGATCCAGC
ATTTCTCACTACCTCTTCTTCCGGGTTGTTCAAGGAGCCTACCTGTTCAAGGGAGTCTCCTCAAGGTTCATCCAGCAGTT
GGTAACAGAGATGCAAGCAGAGTACTTCGCCCCAAAGGAAGACATCATACTGCAGAATGACAGCCCATCGGACTTGTATC
TTCTTGTATCCGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33391.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis