Browse Element(s) Details


Os.9803.1.S1_a_at

Description gb:AK105125.1
DB_XREF= gi:32990334
TID=Os.9803.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9803 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) RNA-binding protein-like (OJ1414_E05.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-E01, full insert sequence.
FL= gb:AK105125.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5517010/11La domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55120OsAffx.23797.1.S1_at11/111+32044890..32046656hypothetical protein
LOC_Os01g55130NANA1+32049066..32049407hypothetical protein
LOC_Os01g55140OsAffx.2336.2.S1_at10/111+32051125..32052091hypothetical protein
LOC_Os01g55150Os.55684.1.S1_at10/111+32054863..32057220bZIP transcription factor family protein, expressed
LOC_Os01g55150OsAffx.9432.1.S1_at8/111+32054863..32057220bZIP transcription factor family protein, expressed
LOC_Os01g55160Os.34913.1.S1_at11/111+32058836..32059797expressed protein
LOC_Os01g55170Os.50721.1.S1_at11/111+32064904..32069629La domain containing protein, expressed
LOC_Os01g55170Os.9803.1.S1_a_at10/111+32064904..32069629La domain containing protein, expressed
LOC_Os01g55180OsAffx.11610.2.S1_at11/111+32070709..32075429hypothetical protein
LOC_Os01g55190Os.8252.1.S1_s_at11/111+32076028..32080215expressed protein
LOC_Os01g55190Os.8252.1.S1_at11/111+32076028..32080215expressed protein
LOC_Os01g55190Os.37713.1.S1_at1/111+32076028..32080215expressed protein
LOC_Os01g55200Os.33391.1.S1_at11/111+32088071..32090735Potassium channel KAT1, putative, expressed
LOC_Os01g55200Os.33391.2.S1_x_at11/111+32088071..32090735Potassium channel KAT1, putative, expressed
LOC_Os01g55210OsAffx.23798.2.S1_at11/111+32091409..32091951F-box domain containing protein
LOC_Os01g55210OsAffx.23798.1.S1_s_at11/111+32091409..32091951F-box domain containing protein
LOC_Os01g55220NANA1+32093478..32093690hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.9803.1.S1_a_at--119--10531Chr01:32066336..32066360 (25 bp)
TTCAGTGGAGAGTGCTTTCGACAAT
LOC_Os01g55170
Os.9803.1.S1_a_at--940--5271Chr01:32066309..32066333 (25 bp)
GAATGTGAACTCTAATATTTCCCAT
LOC_Os01g55170
Os.9803.1.S1_a_at--167--691Chr01:32066038..32066059 (22 bp)
ATGAGGACATGCACCAACACCAAAA
LOC_Os01g55170
Os.9803.1.S1_a_at--750--2751Chr01:32065968..32065992 (25 bp)
AAGAGGTCAGATTCAGCAAAATACA
LOC_Os01g55170
Os.9803.1.S1_a_at--138--2231NONE
ACAAGTGGGCAAGGCCATGTCTCAT
NONE
Os.9803.1.S1_a_at--247--4411Chr01:32065301..32065325 (25 bp)
GCCACTTCTGGTTCTGATCATGTGA
LOC_Os01g55170
Os.9803.1.S1_a_at--965--6431Chr01:32065286..32065310 (25 bp)
GATCATGTGAACAAGCCTATTCCTG
LOC_Os01g55170
Os.9803.1.S1_a_at--88--8971Chr01:32065279..32065303 (25 bp)
TGAACAAGCCTATTCCTGGACCGAG
LOC_Os01g55170
Os.9803.1.S1_a_at--365--10671Chr01:32065267..32065291 (25 bp)
TTCCTGGACCGAGAATGCCGGATGG
LOC_Os01g55170
Os.9803.1.S1_a_at--119--7551Chr01:32065223..32065247 (25 bp)
GGGCGTGGTAAATCTCCTACATTCC
LOC_Os01g55170
Os.9803.1.S1_a_at--894--7831Chr01:32065217..32065241 (25 bp)
GGTAAATCTCCTACATTCCAGAAAG
LOC_Os01g55170
Target Sequence
TTCAGTGGAGAGTGCTTTCGACAATGAGAATGTGAACTCTAATATTTCCCATGAGGACATGCACCAACACCAAAAAGTAA
ATGCTAAAGGAGGACGAAAAGGTCGATATAAATCTCAAGGAAGAGGTCAGATTCAGCAAAATACAAGTGGGCAAGGCCAT
GTCTCATCCCCTGCCACTTCTGGTTCTGATCATGTGAACAAGCCTATTCCTGGACCGAGAATGCCGGATGGGACAAGGGG
CTTTACAATGGGGCGTGGTAAATCTCCTACATTCCAGAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9803.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis