Browse Element(s) Details


OsAffx.23797.1.S1_at

Description gb:NM_191280.1
DB_XREF= gi:34909643
GEN=P0503C12.22
TID=OsAffx.23797.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0503C12.22 (P0503C12.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5512011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55100Os.19843.1.S1_at11/111+32026298..32028134TCP1 protein, putative, expressed
LOC_Os01g55110Os.30433.1.S1_at11/111+32037484..32038749Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g55120OsAffx.23797.1.S1_at11/111+32044890..32046656hypothetical protein
LOC_Os01g55130NANA1+32049066..32049407hypothetical protein
LOC_Os01g55140OsAffx.2336.2.S1_at10/111+32051125..32052091hypothetical protein
LOC_Os01g55150Os.55684.1.S1_at10/111+32054863..32057220bZIP transcription factor family protein, expressed
LOC_Os01g55150OsAffx.9432.1.S1_at8/111+32054863..32057220bZIP transcription factor family protein, expressed
LOC_Os01g55160Os.34913.1.S1_at11/111+32058836..32059797expressed protein
LOC_Os01g55170Os.50721.1.S1_at11/111+32064904..32069629La domain containing protein, expressed
LOC_Os01g55170Os.9803.1.S1_a_at10/111+32064904..32069629La domain containing protein, expressed
LOC_Os01g55180OsAffx.11610.2.S1_at11/111+32070709..32075429hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23797.1.S1_at--990--2991Chr01:32045435..32045459 (25 bp)
AATGATCAAACGCTTCCATCTTTCC
LOC_Os01g55120
OsAffx.23797.1.S1_at--985--10671Chr01:32045414..32045438 (25 bp)
TTCCTTGCCTGCACACAGCAAATTA
LOC_Os01g55120
OsAffx.23797.1.S1_at--541--1551Chr01:32045388..32045412 (25 bp)
AGCTTGCATGGATGACAACTTCTTG
LOC_Os01g55120
OsAffx.23797.1.S1_at--116--6331Chr01:32045358..32045382 (25 bp)
GATGAAGGCTCTCATGGATGCTCGA
LOC_Os01g55120
OsAffx.23797.1.S1_at--751--831Chr01:32045345..32045369 (25 bp)
ATGGATGCTCGAGCTGCTAACCAGC
LOC_Os01g55120
OsAffx.23797.1.S1_at--690--6591Chr01:32045286..32045310 (25 bp)
GATTGCAGCCACCAAGAGGGACATA
LOC_Os01g55120
OsAffx.23797.1.S1_at--225--5191Chr01:32045246..32045270 (25 bp)
GCAAGGCACGTTATGATCAGTCAAT
LOC_Os01g55120
OsAffx.23797.1.S1_at--829--8851Chr01:32045203..32045227 (25 bp)
TGATGCGTCTCACCATTCAACAATA
LOC_Os01g55120
OsAffx.23797.1.S1_at--970--5971Chr01:32045165..32045189 (25 bp)
GAGAACACTTCTGCTGCATATCTAG
LOC_Os01g55120
OsAffx.23797.1.S1_at--949--2691Chr01:32045009..32045033 (25 bp)
AAGCTTTGGCTCACGAAATATTCAG
LOC_Os01g55120
OsAffx.23797.1.S1_at--1044--5031Chr01:32044958..32044982 (25 bp)
GCAGAATGCATGACATACCTCAGTA
LOC_Os01g55120
Target Sequence 
AATGATCAAACGCTTCCATCTTTCCTTGCCTGCACACAGCAAATTAAAGCTTGCATGGATGACAACTTCTTGGATAAGAT
GAAGGCTCTCATGGATGCTCGAGCTGCTAACCAGCGCATGATTAACATGATAACACAAAAGGATTATATGATTGCAGCCA
CCAAGAGGGACATACTGGAGGATCTTGGAGCAAGGCACGTTATGATCAGTCAATTCGAACATGACATTGAATTGATGCGT
CTCACCATTCAACAATACCGAAAGTTGTTTGAGAACACTTCTGCTGCATATCTAGAGTATAGGAACAGGATGTCACGTGA
GGAGGGTGATGGTTCATCTCTGGAAGTTATTGGCATAGCTGATGAGACGGAGCAATTTGTTAGGATGCAGCAACTGGACA
TTTATCAGAGGCTTAATAAGTTTCAAAAGCTTTGGCTCACGAAATATTCAGATCTTGTTGGGCATTTGACAAGAGTAGCA
GAATGCATGACATACCTCAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23797.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis