Browse Element(s) Details


OsAffx.2336.2.S1_at

Description tigr:9629.m05381
TID=OsAffx.2336.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5514010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55100Os.19843.1.S1_at11/111+32026298..32028134TCP1 protein, putative, expressed
LOC_Os01g55110Os.30433.1.S1_at11/111+32037484..32038749Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g55120OsAffx.23797.1.S1_at11/111+32044890..32046656hypothetical protein
LOC_Os01g55130NANA1+32049066..32049407hypothetical protein
LOC_Os01g55140OsAffx.2336.2.S1_at10/111+32051125..32052091hypothetical protein
LOC_Os01g55150Os.55684.1.S1_at10/111+32054863..32057220bZIP transcription factor family protein, expressed
LOC_Os01g55150OsAffx.9432.1.S1_at8/111+32054863..32057220bZIP transcription factor family protein, expressed
LOC_Os01g55160Os.34913.1.S1_at11/111+32058836..32059797expressed protein
LOC_Os01g55170Os.50721.1.S1_at11/111+32064904..32069629La domain containing protein, expressed
LOC_Os01g55170Os.9803.1.S1_a_at10/111+32064904..32069629La domain containing protein, expressed
LOC_Os01g55180OsAffx.11610.2.S1_at11/111+32070709..32075429hypothetical protein
LOC_Os01g55190Os.8252.1.S1_s_at11/111+32076028..32080215expressed protein
LOC_Os01g55190Os.8252.1.S1_at11/111+32076028..32080215expressed protein
LOC_Os01g55190Os.37713.1.S1_at1/111+32076028..32080215expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2336.2.S1_at--611--4831Chr01:32052013..32052037 (25 bp)
GCTCACTTCTCTGCGCAGGTTGGCG
LOC_Os01g55140
OsAffx.2336.2.S1_at--687--9411Chr01:32051875..32051899 (25 bp)
TCGTCGAGGATCTTGTCGCCGTGCT
LOC_Os01g55140
OsAffx.2336.2.S1_at--1155--7291Chr01:32051855..32051879 (25 bp)
GTGCTCGACCAGCTTGTTGGAGTAC
LOC_Os01g55140
OsAffx.2336.2.S1_at--665--4191NONE
CCCGCCTCGGTGAGTATGTCACAAA
NONE
OsAffx.2336.2.S1_at--977--491Chr01:32051392..32051416 (25 bp)
ATCGGTGTACCTGGATGGGAGTTCT
LOC_Os01g55140
OsAffx.2336.2.S1_at--775--3812Chr07:21470194..21470214 (21 bp)
CTGCCGTGGAACAGAGGCCGGTCAT
NONE
OsAffx.2336.2.S1_at--154--8431Chr01:32051354..32051378 (25 bp)
GGCCGGTCATCCACGCCGATGGTGA
LOC_Os01g55140
OsAffx.2336.2.S1_at--618--4051Chr01:32051338..32051362 (25 bp)
CGATGGTGAGGTACTCCTGGTTCCT
LOC_Os01g55140
OsAffx.2336.2.S1_at--244--3791Chr01:32051300..32051324 (25 bp)
CTCGTGTAGTGCACGTCGGAGTCGT
LOC_Os01g55140
OsAffx.2336.2.S1_at--220--5771Chr01:32051268..32051292 (25 bp)
GACGTCGCGGACTCAACGAGGCAGC
LOC_Os01g55140
OsAffx.2336.2.S1_at--806--1631Chr01:32051246..32051270 (25 bp)
AGCGGGATGCATGGCTCCCTGTACA
LOC_Os01g55140
Target Sequence 
GCTCACTTCTCTGCGCAGGTTGGCGGGTGGAGAGAAGGCCTGCGGGGCGAGGCGGGAGAGAAGGAGGGCGTCGGTGGCTG
GCGACGCGGCCACAGGCCACCACGCGGAGTGAGGAGGCCGGCGGGGCCCATGTTCATCTCGTCGAGGATCTTGTCGCCGT
GCTCGACCAGCTTGTTGGAGTACCACGTGAGGAAGAACCTCCCCGCCTCGGTGAGTATGTCACAAATTATGAAATCGGTG
TACCTGGATGGGAGTTCTGCCGTGGAACAGAGGCCGGTCATCCACGCCGATGGTGAGGTACTCCTGGTTCCTCGCGCCGC
CAGGGCTCGTGTAGTGCACGTCGGAGTCGTCGTCGCCGACGTCGCGGACTCAACGAGGCAGCGGGATGCATGGCTCCCTG
TACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2336.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis