Browse Element(s) Details


Os.34913.1.S1_at

Description gb:AK069648.1
DB_XREF= gi:32979672
TID=Os.34913.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34913 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0503C12.25 (P0503C12.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023026P15, full insert sequence.
FL= gb:AK069648.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5516011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55110Os.30433.1.S1_at11/111+32037484..32038749Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g55120OsAffx.23797.1.S1_at11/111+32044890..32046656hypothetical protein
LOC_Os01g55130NANA1+32049066..32049407hypothetical protein
LOC_Os01g55140OsAffx.2336.2.S1_at10/111+32051125..32052091hypothetical protein
LOC_Os01g55150Os.55684.1.S1_at10/111+32054863..32057220bZIP transcription factor family protein, expressed
LOC_Os01g55150OsAffx.9432.1.S1_at8/111+32054863..32057220bZIP transcription factor family protein, expressed
LOC_Os01g55160Os.34913.1.S1_at11/111+32058836..32059797expressed protein
LOC_Os01g55170Os.50721.1.S1_at11/111+32064904..32069629La domain containing protein, expressed
LOC_Os01g55170Os.9803.1.S1_a_at10/111+32064904..32069629La domain containing protein, expressed
LOC_Os01g55180OsAffx.11610.2.S1_at11/111+32070709..32075429hypothetical protein
LOC_Os01g55190Os.8252.1.S1_s_at11/111+32076028..32080215expressed protein
LOC_Os01g55190Os.8252.1.S1_at11/111+32076028..32080215expressed protein
LOC_Os01g55190Os.37713.1.S1_at1/111+32076028..32080215expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34913.1.S1_at--1076--1911Chr01:32059215..32059239 (25 bp)
ACGGGAGGAGCTACTACTCGTTCCA
LOC_Os01g55160
Os.34913.1.S1_at--884--2171Chr01:32059152..32059176 (25 bp)
AACTGTACAGTAGCCCGTTGTGGGA
LOC_Os01g55160
Os.34913.1.S1_at--836--8831Chr01:32059126..32059150 (25 bp)
TGATCAGTGAACTCCGGCTAGCTAG
LOC_Os01g55160
Os.34913.1.S1_at--948--10031Chr01:32059104..32059128 (25 bp)
TAGTAGCCCCTACGTTACGCGTTAG
LOC_Os01g55160
Os.34913.1.S1_at--631--4031Chr01:32059085..32059109 (25 bp)
CGTTAGCGATTAGTGCATGGCCTTC
LOC_Os01g55160
Os.34913.1.S1_at--1062--8451Chr01:32059068..32059092 (25 bp)
TGGCCTTCGCTTAGACTCCAAGTGA
LOC_Os01g55160
Os.34913.1.S1_at--784--2831Chr01:32059049..32059073 (25 bp)
AAGTGACTAGTACCACCACCAGGTT
LOC_Os01g55160
Os.34913.1.S1_at--179--1211Chr01:32059014..32059038 (25 bp)
AGTTTGATCTGCGTTTTTTGCCTCA
LOC_Os01g55160
Os.34913.1.S1_at--260--6811Chr01:32058989..32059013 (25 bp)
GTTTTGCAAATTTAGCGCGCTCTGA
LOC_Os01g55160
Os.34913.1.S1_at--12--5211Chr01:32058907..32058931 (25 bp)
GCAATTCATGCCCTGTTTTTTAGGA
LOC_Os01g55160
Os.34913.1.S1_at--627--10371Chr01:32058890..32058914 (25 bp)
TTTTAGGAGTACTTTCGCACGGTCG
LOC_Os01g55160
Target Sequence 
ACGGGAGGAGCTACTACTCGTTCCACTACCCGTCCTACGGCGCCGACGCCTCCTGCACGGATCAACTGTACAGTAGCCCG
TTGTGGGAGTGATCAGTGAACTCCGGCTAGCTAGTAGCCCCTACGTTACGCGTTAGCGATTAGTGCATGGCCTTCGCTTA
GACTCCAAGTGACTAGTACCACCACCAGGTTCCAGTTTGGTAGTTTGATCTGCGTTTTTTGCCTCAGTTTTGCAAATTTA
GCGCGCTCTGAATTTGCTGGAGAGAGCATGAGTCCATGAGTTTTTTTTTGTGTTATGGTTTTTACCGGGCAATTCATGCC
CTGTTTTTTAGGAGTACTTTCGCACGGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34913.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis