Browse Element(s) Details


OsAffx.9432.1.S1_at

Description gb:NM_191282.1
DB_XREF= gi:34909647
GEN=P0503C12.24
TID=OsAffx.9432.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0503C12.24 (P0503C12.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g551508/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55110Os.30433.1.S1_at11/111+32037484..32038749Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g55120OsAffx.23797.1.S1_at11/111+32044890..32046656hypothetical protein
LOC_Os01g55130NANA1+32049066..32049407hypothetical protein
LOC_Os01g55140OsAffx.2336.2.S1_at10/111+32051125..32052091hypothetical protein
LOC_Os01g55150Os.55684.1.S1_at10/111+32054863..32057220bZIP transcription factor family protein, expressed
LOC_Os01g55150OsAffx.9432.1.S1_at8/111+32054863..32057220bZIP transcription factor family protein, expressed
LOC_Os01g55160Os.34913.1.S1_at11/111+32058836..32059797expressed protein
LOC_Os01g55170Os.50721.1.S1_at11/111+32064904..32069629La domain containing protein, expressed
LOC_Os01g55170Os.9803.1.S1_a_at10/111+32064904..32069629La domain containing protein, expressed
LOC_Os01g55180OsAffx.11610.2.S1_at11/111+32070709..32075429hypothetical protein
LOC_Os01g55190Os.8252.1.S1_s_at11/111+32076028..32080215expressed protein
LOC_Os01g55190Os.8252.1.S1_at11/111+32076028..32080215expressed protein
LOC_Os01g55190Os.37713.1.S1_at1/111+32076028..32080215expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9432.1.S1_at--561--7351Chr01:32055808..32055832 (25 bp)
GTGCAATCTGCATTCTGTGCGATGT
LOC_Os01g55150
OsAffx.9432.1.S1_at--487--2671Chr01:32055836..32055860 (25 bp)
AAGCGACCCGTCGATGAGTTTCACG
LOC_Os01g55150
OsAffx.9432.1.S1_at--652--10291Chr01:32055854..32055878 (25 bp)
TTTCACGGACAGAAGTGGCGCCAGT
LOC_Os01g55150
OsAffx.9432.1.S1_at--1155--8451Chr01:32055869..32055893 (25 bp)
TGGCGCCAGTTTGAGACCGACCGAT
LOC_Os01g55150
OsAffx.9432.1.S1_at--672--2171Chr01:32055904..32055928 (25 bp)
ACACTGGTTGGCTGGCAATAGCACA
LOC_Os01g55150
OsAffx.9432.1.S1_at--1105--251Chr01:32055976..32056000 (25 bp)
ATATGCACGCCTGCGGATGTCTTAC
LOC_Os01g55150
OsAffx.9432.1.S1_at--987--751Chr01:32056057..32056081 (25 bp)
ATGTCATGCCATGATCCAGACGCAC
LOC_Os01g55150
OsAffx.9432.1.S1_at--1148--3831Chr01:32056088..32056112 (25 bp)
CTGCTTCTGCATGGATGGATTGGCC
LOC_Os01g55150
OsAffx.9432.1.S1_at--1113--1751Chr01:32057432..32057456 (25 bp)
ACCTGCGCAGCATATCGTTATCGTG
NONE
OsAffx.9432.1.S1_at--109--6751Chr01:32057448..32057472 (25 bp)
GTTATCGTGGAACACCGTTACTGCT
NONE
OsAffx.9432.1.S1_at--860--6771Chr01:32057464..32057488 (25 bp)
GTTACTGCTCCAGTTTCAAGGACAA
NONE
Target Sequence 
GTGCAATCTGCATTCTGTGCGATGTAGTAAGCGACCCGTCGATGAGTTTCACGGACAGAAGTGGCGCCAGTTTGAGACCG
ACCGATGGACACAGCCACACTGGTTGGCTGGCAATAGCACACAATGTGGCGAGGAGATGAGCGAGAGCGTGAGCCCCCAC
CCTCGTGCATATGCACGCCTGCGGATGTCTTACTTCACCTCACCCCCCGTACGGCACCAACCAGCCCACGTAGACGTAGT
GGCAATGGCATGTCATGCCATGATCCAGACGCACATGGTTCTGCTTCTGCATGGATGGATTGGCCAGTGGGCAGTGAACG
AGGTATCCGTGCTGTCCCCTCGGGTGGCGTTTCTGGATCAGCAGCGGACGATCCTGACCGTCGGCAACAGCCACCTCAAG
CAGCGGATCGCGGCTCTAGCACAGGACAAGATTTTCAAGGATGAAACCACCGGAGGCGAAAAACCTGCGCAGCATATCGT
TATCGTGGAACACCGTTACTGCTCCAGTTTCAAGGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9432.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis