Browse Element(s) Details


OsAffx.23798.2.S1_at

Description tigr:9629.m05389
TID=OsAffx.23798.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5521011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55170Os.50721.1.S1_at11/111+32064904..32069629La domain containing protein, expressed
LOC_Os01g55170Os.9803.1.S1_a_at10/111+32064904..32069629La domain containing protein, expressed
LOC_Os01g55180OsAffx.11610.2.S1_at11/111+32070709..32075429hypothetical protein
LOC_Os01g55190Os.8252.1.S1_s_at11/111+32076028..32080215expressed protein
LOC_Os01g55190Os.8252.1.S1_at11/111+32076028..32080215expressed protein
LOC_Os01g55190Os.37713.1.S1_at1/111+32076028..32080215expressed protein
LOC_Os01g55200Os.33391.1.S1_at11/111+32088071..32090735Potassium channel KAT1, putative, expressed
LOC_Os01g55200Os.33391.2.S1_x_at11/111+32088071..32090735Potassium channel KAT1, putative, expressed
LOC_Os01g55210OsAffx.23798.2.S1_at11/111+32091409..32091951F-box domain containing protein
LOC_Os01g55210OsAffx.23798.1.S1_s_at11/111+32091409..32091951F-box domain containing protein
LOC_Os01g55220NANA1+32093478..32093690hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23798.2.S1_at--1001--4711Chr01:32091696..32091720 (25 bp)
GCTGGAGCCCGGTATGGTGCTCTAT
LOC_Os01g55210
OsAffx.23798.2.S1_at--692--8531Chr01:32091694..32091718 (25 bp)
TGGAGCCCGGTATGGTGCTCTATGC
LOC_Os01g55210
OsAffx.23798.2.S1_at--572--8091Chr01:32091693..32091717 (25 bp)
GGAGCCCGGTATGGTGCTCTATGCC
LOC_Os01g55210
OsAffx.23798.2.S1_at--870--5871Chr01:32091692..32091716 (25 bp)
GAGCCCGGTATGGTGCTCTATGCCG
LOC_Os01g55210
OsAffx.23798.2.S1_at--11--1671Chr01:32091691..32091715 (25 bp)
AGCCCGGTATGGTGCTCTATGCCGC
LOC_Os01g55210
OsAffx.23798.2.S1_at--1115--4531Chr01:32091690..32091714 (25 bp)
GCCCGGTATGGTGCTCTATGCCGCT
LOC_Os01g55210
OsAffx.23798.2.S1_at--871--4251Chr01:32091688..32091712 (25 bp)
CCGGTATGGTGCTCTATGCCGCTCG
LOC_Os01g55210
OsAffx.23798.2.S1_at--785--7851Chr01:32091686..32091710 (25 bp)
GGTATGGTGCTCTATGCCGCTCGCG
LOC_Os01g55210
OsAffx.23798.2.S1_at--83--6931Chr01:32091685..32091709 (25 bp)
GTATGGTGCTCTATGCCGCTCGCGG
LOC_Os01g55210
OsAffx.23798.2.S1_at--956--811Chr01:32091683..32091707 (25 bp)
ATGGTGCTCTATGCCGCTCGCGGCG
LOC_Os01g55210
OsAffx.23798.2.S1_at--1008--4211Chr01:32091670..32091694 (25 bp)
CCGCTCGCGGCGGATGAGCTCCCCA
LOC_Os01g55210
Target Sequence 
GCTGGAGCCCGGTATGGTGCTCTATGCCGCTCGCGGCGGATGAGCTCCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23798.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis