Browse Element(s) Details


OsAffx.4970.1.S1_at

Description tigr:9634.m02908
TID=OsAffx.4970.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3025011/11expressed protein
LOC_Os03g124141/11Cyclin, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g30200OsAffx.30217.1.S1_x_at3/116+17428176..17429383transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g30200Os.51185.2.S1_at1/116+17428176..17429383transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g30200Os.26984.1.A1_at1/116+17428176..17429383transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g30210OsAffx.27877.1.S1_at10/116+17433122..17437215expressed protein
LOC_Os06g30220NANA6+17441125..17442234retrotransposon protein, putative, unclassified
LOC_Os06g30230Os.15352.1.S1_at11/116+17442893..17445408expressed protein
LOC_Os06g30240OsAffx.27878.1.S1_x_at11/116+17451506..17451808hypothetical protein
LOC_Os06g30240OsAffx.27878.1.S1_at11/116+17451506..17451808hypothetical protein
LOC_Os06g30250OsAffx.4970.1.S1_at11/116+17453254..17454482expressed protein
LOC_Os06g30260NANA6+17458707..17462983retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g30270NANA6+17465821..17468563hypothetical protein
LOC_Os06g30280Os.16112.1.S1_s_at11/116+17469749..17470494expressed protein
LOC_Os06g30280OsAffx.4971.1.S1_at8/116+17469749..17470494expressed protein
LOC_Os06g30290OsAffx.31780.2.S1_s_at6/116+17477779..17481218transposon protein, putative, unclassified
LOC_Os06g30290OsAffx.31780.2.S1_x_at2/116+17477779..17481218transposon protein, putative, unclassified
LOC_Os06g30290OsAffx.21663.1.S1_at1/116+17477779..17481218transposon protein, putative, unclassified
LOC_Os06g30290OsAffx.31780.1.S1_at1/116+17477779..17481218transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0016538molecular_functioncyclin-dependent protein kinase regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4970.1.S1_at--439--5771Chr06:17453931..17453955 (25 bp)
GACGATCTTGGAGCTCATCGACTGA
LOC_Os06g30250
OsAffx.4970.1.S1_at--261--3871Chr06:17453981..17454005 (25 bp)
CTGATATATCATGCCTTGAGCTTGG
LOC_Os06g30250
OsAffx.4970.1.S1_at--628--5351Chr06:17454030..17454054 (25 bp)
GAAGAGGTACGAGGTTCCCATTTCT
LOC_Os06g30250
OsAffx.4970.1.S1_at--103--3071Chr06:17454130..17454154 (25 bp)
AATCAGTAGCGGTCGCTGCAGAGAT
LOC_Os06g30250
OsAffx.4970.1.S1_at--620--10051Chr06:17454154..17454178 (25 bp)
TATAGGATGCCTACCTAACCTACCA
LOC_Os06g30250
OsAffx.4970.1.S1_at--458--5131Chr06:17454249..17454273 (25 bp)
GCAAAACATGGCTGGCACCGGCAAA
LOC_Os06g30250
OsAffx.4970.1.S1_at--382--1331Chr06:17454273..17454297 (25 bp)
AGAGAAGCATATTTCCCCAATTCCC
LOC_Os06g30250
OsAffx.4970.1.S1_at--666--10651Chr06:17454285..17454309 (25 bp)
TTCCCCAATTCCCATATTTGCAGTT
LOC_Os06g30250
OsAffx.4970.1.S1_at--933--10731Chr06:17454302..17454326 (25 bp)
TTGCAGTTCGATATATCAGCTTCTT
LOC_Os06g30250
OsAffx.4970.1.S1_at--2--9671Chr06:17454317..17454341 (25 bp)
TCAGCTTCTTTCATTTCGATGGCAA
LOC_Os06g30250
OsAffx.4970.1.S1_at--1057--3012Chr06:17454340..17454364 (25 bp)
AATGCTCTGCATTGTACACCAATTT
LOC_Os06g30250
Target Sequence 
GACGATCTTGGAGCTCATCGACTGATCAAACTCATTTTCATTGGATTTTGCTGATATATCATGCCTTGAGCTTGGCAATT
GGGGGATGGTTTGATGCCGGAAGAGGTACGAGGTTCCCATTTCTTTTGTGGGAAATTTGAGGGTAGCAAAAGCATCAGTT
GAACTCGTGAGAATGTTAGGAATTTGGTGGTATGCGGCGAATCAGTAGCGGTCGCTGCAGAGATATAGGATGCCTACCTA
ACCTACCAGTCTGAATCATTACCTGTGATGAATGAAAACATGAAGCTGTTCTGGTAAAATCATATCAGGTTAAATTTTGC
AAAACATGGCTGGCACCGGCAAAGAGAAGCATATTTCCCCAATTCCCATATTTGCAGTTCGATATATCAGCTTCTTTCAT
TTCGATGGCAATGCTCTGCATTGTACACCAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4970.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis