Browse Element(s) Details


Os.50295.1.S1_at

Description gb:AK120590.1
DB_XREF= gi:37990213
TID=Os.50295.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50295 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013145N02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013145N02, full insert sequence.
FL= gb:AK120590.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2974011/11expressed protein
LOC_Os12g294302/11expressed protein
LOC_Os02g273891/11
LOC_Os02g189541/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g29710OsAffx.31932.2.S1_at11/1112+17729944..17734518NB-ARC domain containing protein
LOC_Os12g29719OsAffx.19888.1.S1_at11/1112+17739371..17741180hypothetical protein
LOC_Os12g29730OsAffx.30032.4.S1_at11/1112+17747403..17747939hypothetical protein
LOC_Os12g29730OsAffx.28563.1.S1_x_at1/1112+17747403..17747939hypothetical protein
LOC_Os12g29730OsAffx.16416.1.S1_x_at1/1112+17747403..17747939hypothetical protein
LOC_Os12g29740Os.50295.1.S1_at11/1112+17750698..17754132expressed protein
LOC_Os12g29750Os.52805.1.S1_at5/1112+17757459..17759947membrane protein, putative, expressed
LOC_Os12g29760Os.10021.1.S1_at11/1112+17760106..17762545oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os12g29780OsAffx.31934.1.S1_at9/1112+17773550..17774802hypothetical protein
LOC_Os12g29780OsAffx.20927.1.S1_x_at2/1112+17773550..17774802hypothetical protein
LOC_Os12g29790NANA12+17776955..17777251retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0005886cellular_componentplasma membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50295.1.S1_at--1138--5131Chr12:17751214..17751238 (25 bp)
GCAACAACTACCAGTCGCTGGTGGA
LOC_Os12g29740
Os.50295.1.S1_at--828--91Chr12:17750983..17751007 (25 bp)
ATTCGAACGGGAACGGTGATGCTGC
LOC_Os12g29740
Os.50295.1.S1_at--1063--531Chr12:17750945..17750969 (25 bp)
ATCGCCGGCGATTCTTTGCAGGAAG
LOC_Os12g29740
Os.50295.1.S1_at--1041--4471Chr12:17750942..17750966 (25 bp)
GCCGGCGATTCTTTGCAGGAAGGAA
LOC_Os12g29740
Os.50295.1.S1_at--1002--931Chr12:17750922..17750946 (25 bp)
AGGAAGCAGTGATCACCTCGAACCC
LOC_Os12g29740
Os.50295.1.S1_at--569--4271Chr12:17750907..17750931 (25 bp)
CCTCGAACCCACAAACGGTGAATTG
LOC_Os12g29740
Os.50295.1.S1_at--909--2551Chr12:17750894..17750918 (25 bp)
AACGGTGAATTGTGAATCTTGGGAT
LOC_Os12g29740
Os.50295.1.S1_at--197--9531Chr12:17750878..17750902 (25 bp)
TCTTGGGATTAATACAACCTTGTCA
LOC_Os12g29740
Os.50295.1.S1_at--982--101512Chr07:27859506..27859535 (25 bp)
TATATTTGACTAGCAAAAGTGCCCG
NONE
Os.50295.1.S1_at--54--21521Chr12:17473379..17473403 (25 bp)
ACAGAGTGTGTATATTGACCAAAAG
LOC_Os12g29430
Os.50295.1.S1_at--1073--66518Chr12:17473434..17473458 (25 bp)
GTTGCACCGGGAAGTTTACAGATCA
LOC_Os12g29430
Target Sequence 
GCAACAACTACCAGTCGCTGGTGGACTTCTTGCCGGGGTCGGTGTTCTCCTCCTCGCCGGACCTGGCCAACCTGCTCAAG
CTCTACACCGAGGGCAATGGCGGCGGCCGTCGACTGACCGACGCGCCGGTGCCGGTGGTCACCGAGGTGGTTGAGGAAGA
AGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGTCGCCGTCGCGGCCATCGGTGGCGTGGATTCGAACG
GGAACGGTGATGCTGCCGCCACCATCGCCATCGCCGGCGATTCTTTGCAGGAAGGAAGCAGTGATCACCTCGAACCCACA
AACGGTGAATTGTGAATCTTGGGATTAATACAACCTTGTCAATATATACATATCATGTAATTATATTTGACTAGCAAAAG
TGCCCGTGCGTTGCACCGGGTGATTACAGAGTGTGTATATTGACCAAAAGTGTTGTTTGGTTTAGCAAAAGTGCCCGTGC
GTTGCACCGGGAAGTTTACAGATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50295.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis