Browse Element(s) Details

Os.7246.2.S1_s_at

Description

gb:CB627940
DB_XREF= gi:29622929
DB_XREF=OSIIEb03D03.f
CLONE=OSIIEb03D03
TID=Os.7246.2
CNT=15
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.7246 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_188446.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g27560	10/11	HGA1, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g27520	OsAffx.28563.1.S1_x_at	1/11	6	+	15583221..15584729	hypothetical protein
LOC_Os06g27520	OsAffx.16416.1.S1_x_at	1/11	6	+	15583221..15584729	hypothetical protein
LOC_Os06g27530	OsAffx.24317.2.S1_x_at	10/11	6	+	15586279..15587703	hypothetical protein
LOC_Os06g27540	OsAffx.30032.4.S1_at	1/11	6	+	15588926..15593922	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g27550	NA	NA	6	+	15595294..15596839	hypothetical protein
LOC_Os06g27560	Os.7246.1.S1_s_at	11/11	6	+	15600605..15602930	HGA1, putative, expressed
LOC_Os06g27560	Os.7246.2.S1_s_at	10/11	6	+	15600605..15602930	HGA1, putative, expressed
LOC_Os06g27570	NA	NA	6	+	15605249..15605884	hypothetical protein
LOC_Os06g27580	NA	NA	6	+	15607455..15610167	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g27590	OsAffx.15629.1.S1_at	5/11	6	+	15610977..15611819	expressed protein
LOC_Os06g27600	NA	NA	6	+	15617541..15619052	retrotransposon protein, putative, unclassified
LOC_Os06g27610	OsAffx.18868.4.S1_at	11/11	6	+	15620655..15623546	hypothetical protein
LOC_Os06g27610	OsAffx.18868.5.S1_x_at	1/11	6	+	15620655..15623546	hypothetical protein
LOC_Os06g27610	Os.50767.1.S1_x_at	1/11	6	+	15620655..15623546	hypothetical protein
LOC_Os06g27620	OsAffx.27837.1.S1_at	11/11	6	+	15626840..15627547	hypothetical protein
LOC_Os06g27620	OsAffx.6927.1.S1_at	1/11	6	+	15626840..15627547	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.7246.2.S1_s_at--267--45	1	Chr06:15600952..15601067 (25 bp)	ATCTACTCGCCGGTCTTCGAGAGCA	LOC_Os06g27560
Os.7246.2.S1_s_at--849--1063	1	NONE	TTCGAGAGCACGTCCTTGGTGATGA	NONE
Os.7246.2.S1_s_at--543--911	1	Chr06:15601096..15601120 (25 bp)	TGCGTCGACTCAGCAGAACCCTGTG	LOC_Os06g27560
Os.7246.2.S1_s_at--933--143	1	Chr06:15601110..15601134 (25 bp)	AGAACCCTGTGCTGGCTCAACAACA	LOC_Os06g27560
Os.7246.2.S1_s_at--526--573	1	Chr06:15601174..15601198 (25 bp)	GACGGACCGGAAAGTGCCAAGCTTT	LOC_Os06g27560
Os.7246.2.S1_s_at--910--887	1	Chr06:15601486..15601510 (25 bp)	TGAGGCCACAATCTCCTGCGATGAG	LOC_Os06g27560
Os.7246.2.S1_s_at--1140--545	1	Chr06:15601510..15601534 (25 bp)	GAACGGCGTTGATGAGGGCTTCCCA	LOC_Os06g27560
Os.7246.2.S1_s_at--466--463	1	Chr06:15601566..15601590 (25 bp)	GCGATATCCGGATCAGCCCAAAGGA	LOC_Os06g27560
Os.7246.2.S1_s_at--644--73	1	Chr06:15601598..15601622 (25 bp)	ATGTTCTTCGTAAATCCGTCCAGCG	LOC_Os06g27560
Os.7246.2.S1_s_at--403--145	1	Chr06:15601647..15601671 (25 bp)	AGAAGAAGATCCGACCGTACGCTCG	LOC_Os06g27560
Os.7246.2.S1_s_at--557--103	1	Chr06:15601704..15601728 (25 bp)	AGGTCATCATCAAGTCGGTCTCGTC	LOC_Os06g27560

Target Sequence

ATCTACTCGCCGGTCTTCGAGAGCACGTCCTTGGTGATGAAGAACGCACCACCTGCGTCGACTCAGCAGAACCCTGTGCT
GGCTCAACAACAGAGCAAAGAAGAGGACGAGAAAGATGTTGGTGAAGATGAGACGGACCGGAAAGTGCCAAGCTTTNCGG
AGACGACAGAAAAGAATGAAGAGGAGGAAACAGTAACNGAAACCATCCGGGGACGAAGCTGAGGCCACAATCTCCTGCGA
TGAGAACGGCGTTGATGAGGGCTTCCCATATGCGCGGCCACCGGTCTGCGAGCTCACCGGCGATATCCGGATCAGCCCAA
AGGAGAAAACCATGTTCTTCGTAAATCCGTCCAGCGCCGGCGCGTTCGACGGCAACGGGGAGAAGAAGATCCGACCGTAC
GCTCGCAAGGACGACTTCCTCCTCCCGGGCGTCGTGGAGGTCATCATCAAGTCGGTCTCGTC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis