Browse Element(s) Details


OsAffx.30665.1.A1_x_at

Description gb:NM_197044.1
DB_XREF= gi:37535447
TID=OsAffx.30665.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0012L23.43), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g429301/11hypothetical protein
LOC_Os11g266301/11hypothetical protein
LOC_Os11g266601/11hypothetical protein
LOC_Os01g126101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42890OsAffx.25503.1.S1_at11/113+23869970..23871596hypothetical protein
LOC_Os03g42890OsAffx.5954.2.S1_at1/113+23869970..23871596hypothetical protein
LOC_Os03g42900Os.13727.1.S1_at11/113+23879913..23888496KH domain containing protein, expressed
LOC_Os03g42910OsAffx.25504.1.S1_at11/113+23891739..23892293hypothetical protein
LOC_Os03g42920OsAffx.25505.1.S1_x_at11/113+23892619..23893119hypothetical protein
LOC_Os03g42930OsAffx.24317.2.S1_x_at7/113+23894330..23897354hypothetical protein
LOC_Os03g42930OsAffx.24317.5.S1_x_at2/113+23894330..23897354hypothetical protein
LOC_Os03g42930OsAffx.30665.1.A1_x_at1/113+23894330..23897354hypothetical protein
LOC_Os03g42930OsAffx.23379.1.S1_at1/113+23894330..23897354hypothetical protein
LOC_Os03g42950NANA3+23901335..23904789retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g42954OsAffx.27728.1.S1_at1/113+23908379..23909164hypothetical protein
LOC_Os03g42960OsAffx.17852.2.S1_at11/113+23912119..23915380hypothetical protein
LOC_Os03g42960OsAffx.17852.1.S1_at2/113+23912119..23915380hypothetical protein
LOC_Os03g42970OsAffx.24317.6.S1_x_at5/113+23917258..23920108transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30665.1.A1_x_at--153--4691Chr10:17872546..17872570 (25 bp)
GCGGATCCGGCTCCCGGCAACGAGA
NONE
OsAffx.30665.1.A1_x_at--727--3251Chr10:17872529..17872553 (25 bp)
CAACGAGAGGCGGACGGCGACGAGA
NONE
OsAffx.30665.1.A1_x_at--53--1955Chr01:6937327..6937346 (20 bp)
ACGGCGACGAGAGGCGGACGGTGAC
LOC_Os01g12610
OsAffx.30665.1.A1_x_at--163--5751Chr10:17872500..17872524 (25 bp)
GACGGTGACGAGAGGCGCTCTCCTC
NONE
OsAffx.30665.1.A1_x_at--329--9331Chr10:17872477..17872501 (25 bp)
TCGCCACTGGCATGCCGGACGAAGG
NONE
OsAffx.30665.1.A1_x_at--656--591Chr10:17872466..17872490 (25 bp)
ATGCCGGACGAAGGTGAGGCCTCCT
NONE
OsAffx.30665.1.A1_x_at--1057--5291Chr10:17872457..17872481 (25 bp)
GAAGGTGAGGCCTCCTCCCCATCTT
NONE
OsAffx.30665.1.A1_x_at--1099--6011Chr10:17872364..17872388 (25 bp)
GAGAGGATATTTTCGATTTGACGGC
NONE
OsAffx.30665.1.A1_x_at--450--7931Chr10:17872360..17872384 (25 bp)
GGATATTTTCGATTTGACGGCGTGG
NONE
OsAffx.30665.1.A1_x_at--89--211Chr10:17872349..17872373 (25 bp)
ATTTGACGGCGTGGCCACGTGCTCA
NONE
OsAffx.30665.1.A1_x_at--876--8451Chr10:17872338..17872362 (25 bp)
TGGCCACGTGCTCAATCTTCCTCTT
NONE
Target Sequence 
GCGGATCCGGCTCCCGGCAACGAGAGGCGGACGGCGACGAGAGGCGGACGGTGACGAGAGGCGCTCTCCTCGCCACTGGC
ATGCCGGACGAAGGTGAGGCCTCCTCCCCATCTTCCACCGTGCCGCCGGCCTCCTTCCCTTCCCCCACCACGCCGGCCGG
ATCTGGGAGCTAGATGGAGAAAGAGAGGATATTTTCGATTTGACGGCGTGGCCACGTGCTCAATCTTCCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30665.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis