Browse Element(s) Details


OsAffx.23379.1.S1_at

Description tigr:9629.m02421
TID=OsAffx.23379.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2499011/11hypothetical protein
LOC_Os03g429301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24950Os.27106.1.S1_at11/111+14042084..14046682Exocyst complex subunit Sec15-like family protein, expressed
LOC_Os01g24960OsAffx.22830.1.S1_at11/111+14050615..14051985dirigent, putative
LOC_Os01g24970OsAffx.11197.1.S1_at11/111+14058802..14059101hypothetical protein
LOC_Os01g24980Os.27188.1.S1_at11/111+14060142..14063181oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g24990OsAffx.23379.1.S1_at11/111+14068315..14069516hypothetical protein
LOC_Os01g25000OsAffx.23380.1.S1_at11/111+14080143..14081268hypothetical protein
LOC_Os01g25010Os.53353.1.S1_at10/111+14084475..14090564oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23379.1.S1_at--119--7713Chr09:2085329..2085612 (25 bp)
GGTGGCCGGCGGTATTTATAGAGGA
NONE
OsAffx.23379.1.S1_at--856--1171Chr01:14068692..14068716 (25 bp)
AGTAGCTAGGGTTAGGGCACACGGC
LOC_Os01g24990
OsAffx.23379.1.S1_at--675--8231Chr01:14068707..14068731 (25 bp)
GGCACACGGCGCAAGCTTTGGAAAG
LOC_Os01g24990
OsAffx.23379.1.S1_at--453--3312Chr06:19650815..19651298 (25 bp)
CACACGGCGCAAGCTTTGGAAAGGC
NONE
OsAffx.23379.1.S1_at--335--2191Chr01:14068728..14068752 (25 bp)
AAAGGCGGCGGCTCCAAATTTGGCG
LOC_Os01g24990
OsAffx.23379.1.S1_at--689--8273Chr01:14068737..14068761 (25 bp)
GGCTCCAAATTTGGCGGCGCGGCTT
LOC_Os01g24990
OsAffx.23379.1.S1_at--967--4671Chr01:14068755..14068779 (25 bp)
GCGGCTTGCGGGATTTTGCGGCGGC
LOC_Os01g24990
OsAffx.23379.1.S1_at--178--7471Chr01:14068783..14068807 (25 bp)
GTGGGCTTGCGGCACGGGCTCGGTC
LOC_Os01g24990
OsAffx.23379.1.S1_at--288--6351Chr01:14068841..14068865 (25 bp)
GATGCCGGGCCGAGGGCAGCACGTG
LOC_Os01g24990
OsAffx.23379.1.S1_at--697--9631Chr01:14069280..14069304 (25 bp)
TCAGGACGTGACACATCTCCAGGTG
LOC_Os01g24990
OsAffx.23379.1.S1_at--732--8111Chr01:14069283..14069307 (25 bp)
GGACGTGACACATCTCCAGGTGAAT
LOC_Os01g24990
Target Sequence 
GGTGGCCGGCGGTATTTATAGAGGAGGGAGTAGCTAGGGTTAGGGCACACGGCGCAAGCTTTGGAAAGGCGGCGGCTCCA
AATTTGGCGGCGCGGCTTGCGGGATTTTGCGGCGGCCGTGTGGGCTTGCGGCACGGGCTCGGTCGGCGGCGGCTTGGGCC
GGGGACACAGAGAGGAGGATGCCGGGCCGAGGGCAGCACGTGGGCTCGGGGCTTGGCCTCCCCGGGCCTGCAGCTCAAGA
AGAGAGAGCTGGAGGCGAGAAGAACGGAAAGCGAAAAATCAGGACGTGACACATCTCCAGGTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23379.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis