Browse Element(s) Details


OsAffx.23380.1.S1_at

Description tigr:9629.m02422
TID=OsAffx.23380.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2500011/11hypothetical protein
LOC_Os03g572301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24970OsAffx.11197.1.S1_at11/111+14058802..14059101hypothetical protein
LOC_Os01g24980Os.27188.1.S1_at11/111+14060142..14063181oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g24990OsAffx.23379.1.S1_at11/111+14068315..14069516hypothetical protein
LOC_Os01g25000OsAffx.23380.1.S1_at11/111+14080143..14081268hypothetical protein
LOC_Os01g25010Os.53353.1.S1_at10/111+14084475..14090564oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g25020OsAffx.23381.1.S1_at10/111+14096054..14096774hypothetical protein
LOC_Os01g25030OsAffx.23382.1.S1_at11/111+14099479..14100370dirigent, putative
LOC_Os01g25040OsAffx.8372.1.S1_at3/111+14104596..14109994transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25040OsAffx.8371.1.S1_at1/111+14104596..14109994transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25040OsAffx.3354.1.S1_at1/111+14104596..14109994transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23380.1.S1_at--1136--1331Chr01:14080776..14080800 (25 bp)
AGAGAATTGTCCCTACAGCGAGCTG
LOC_Os01g25000
OsAffx.23380.1.S1_at--960--1471Chr01:14080856..14080880 (25 bp)
AGAATCAGTGCCTCACTGCTGACAA
LOC_Os01g25000
OsAffx.23380.1.S1_at--1124--8151Chr01:14080892..14080916 (25 bp)
GGAACTGGCCACATGACGATCTTTG
LOC_Os01g25000
OsAffx.23380.1.S1_at--309--2771Chr01:14080934..14080958 (25 bp)
AAGACGAGGACTGCCATCACCTGTT
LOC_Os01g25000
OsAffx.23380.1.S1_at--388--391Chr01:14080949..14080973 (25 bp)
ATCACCTGTTCGTTGGCTGCGATTA
LOC_Os01g25000
OsAffx.23380.1.S1_at--799--6251Chr01:14081003..14081027 (25 bp)
GATGGTGCAGTGCTAGCTTCGCAAT
LOC_Os01g25000
OsAffx.23380.1.S1_at--407--10011Chr01:14081016..14081040 (25 bp)
TAGCTTCGCAATCCCGGCAGATGAG
LOC_Os01g25000
OsAffx.23380.1.S1_at--2--6311Chr01:14081035..14081059 (25 bp)
GATGAGGAGAACACCCTGTCTGACT
LOC_Os01g25000
OsAffx.23380.1.S1_at--24--7531Chr01:14081061..14081085 (25 bp)
GTGGCTGGCAACAAGACGTCGTTTT
LOC_Os01g25000
OsAffx.23380.1.S1_at--51--3494Chr05:17867600..17867624 (25 bp)
CAGGACGGATTTTGACAGTGCATTC
NONE
OsAffx.23380.1.S1_at--917--6051Chr01:14081162..14081186 (25 bp)
GAGTTTTTCAACACGTGTCCAAGTC
LOC_Os01g25000
Target Sequence 
AGAGAATTGTCCCTACAGCGAGCTGCTATGGCGCTCCAGGGCCCCCTCGCGCGTCCGCTTCTTCACGTGGATCACGCTAA
AGAATCAGTGCCTCACTGCTGACAACCTTGCCAAGCGGAACTGGCCACATGACGATCTTTGCCCGCTCTATCAGCGACAA
GACGAGGACTGCCATCACCTGTTCGTTGGCTGCGATTACATGGTGGCGGTGTGGAGAATTATCAGGAGATGGTGCAGTGC
TAGCTTCGCAATCCCGGCAGATGAGGAGAACACCCTGTCTGACTGGTGGCTGGCAACAAGACGTCGTTTTCGAACGAGCT
ACAGGACGGATTTTGACAGTGCATTCATGCTAATTTGTTGGTTGATTTGGAAGGAGCTTAACGCAAGAGTTTTTCAACAC
GTGTCCAAGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23380.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis