Browse Element(s) Details


OsAffx.11197.1.S1_at

Description gb:NM_184037.1
DB_XREF= gi:34895201
GEN=P0463A02.23
TID=OsAffx.11197.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0463A02.23 (P0463A02.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2497011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24940Os.24852.1.A1_at10/111+14030423..14041200Poly synthetase 2, putative
LOC_Os01g24940OsAffx.28592.1.S1_at1/111+14030423..14041200Poly synthetase 2, putative
LOC_Os01g24940Os.35524.1.S3_at1/111+14030423..14041200Poly synthetase 2, putative
LOC_Os01g24950Os.27106.1.S1_at11/111+14042084..14046682Exocyst complex subunit Sec15-like family protein, expressed
LOC_Os01g24960OsAffx.22830.1.S1_at11/111+14050615..14051985dirigent, putative
LOC_Os01g24970OsAffx.11197.1.S1_at11/111+14058802..14059101hypothetical protein
LOC_Os01g24980Os.27188.1.S1_at11/111+14060142..14063181oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g24990OsAffx.23379.1.S1_at11/111+14068315..14069516hypothetical protein
LOC_Os01g25000OsAffx.23380.1.S1_at11/111+14080143..14081268hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11197.1.S1_at--361--311Chr01:14058838..14058862 (25 bp)
ATAGCCTCACTGTTGTCCGCCGTCG
LOC_Os01g24970
OsAffx.11197.1.S1_at--184--10731Chr01:14058868..14058892 (25 bp)
TTGCATCATCCACCCATGTTCGCTG
LOC_Os01g24970
OsAffx.11197.1.S1_at--1054--4151Chr01:14058897..14058921 (25 bp)
CGCCGGGAAAGAATGCCTTGGCTTC
LOC_Os01g24970
OsAffx.11197.1.S1_at--577--5551Chr01:14058903..14058927 (25 bp)
GAAAGAATGCCTTGGCTTCGTCGCC
LOC_Os01g24970
OsAffx.11197.1.S1_at--472--1451Chr01:14058906..14058930 (25 bp)
AGAATGCCTTGGCTTCGTCGCCGTC
LOC_Os01g24970
OsAffx.11197.1.S1_at--1077--7231Chr01:14058922..14058946 (25 bp)
GTCGCCGTCGGGTCGAGTGCCTCAG
LOC_Os01g24970
OsAffx.11197.1.S1_at--906--7211Chr01:14058933..14058957 (25 bp)
GTCGAGTGCCTCAGTCGGCAAGATG
LOC_Os01g24970
OsAffx.11197.1.S1_at--509--1751Chr01:14058983..14059007 (25 bp)
ACCTCGGCCGGCGTAATGATCGGAG
LOC_Os01g24970
OsAffx.11197.1.S1_at--471--4291Chr01:14058984..14059008 (25 bp)
CCTCGGCCGGCGTAATGATCGGAGT
LOC_Os01g24970
OsAffx.11197.1.S1_at--673--711Chr01:14058998..14059022 (25 bp)
ATGATCGGAGTGGAGGTGGCACAAT
LOC_Os01g24970
OsAffx.11197.1.S1_at--21--8412Chr01:14059036..14059060 (25 bp)
GGCGCGATAGCGAGGGAGGCTCGAC
LOC_Os01g24970
Target Sequence 
ATAGCCTCACTGTTGTCCGCCGTCGCTCGCTTGCATCATCCACCCATGTTCGCTGCCACCGCCGGGAAAGAATGCCTTGG
CTTCGTCGCCGTCGGGTCGAGTGCCTCAGTCGGCAAGATGGGAGATGAGCGGAGCGGAGGAGGCCACCTCGGCCGGCGTA
ATGATCGGAGTGGAGGTGGCACAATGGTGAGGGGGGTGGGCGCGATAGCGAGGGAGGCTCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11197.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis