Browse Element(s) Details


Os.24852.1.A1_at

Description gb:CA762848
DB_XREF= gi:25806887
DB_XREF=BR060006B10G02.ab1
CLONE=BR060006B10G02.ab1
TID=Os.24852.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.24852 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative NAD+ ADP-ribosyltransferase (B1051E10.37), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2494010/11Poly synthetase 2, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24890NANA1+14003761..14006639transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24900OsAffx.23377.2.S1_at11/111+14008548..14009041hypothetical protein
LOC_Os01g24910OsAffx.7362.1.S1_x_at1/111+14009272..14011314transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24920OsAffx.23378.1.S1_at5/111+14013845..14021269WGR domain containing protein, expressed
LOC_Os01g24930OsAffx.11196.1.S1_s_at11/111+14025570..14026564hypothetical protein
LOC_Os01g24930OsAffx.11196.2.S1_at3/111+14025570..14026564hypothetical protein
LOC_Os01g24930OsAffx.11196.1.S1_at1/111+14025570..14026564hypothetical protein
LOC_Os01g24940Os.24852.1.A1_at10/111+14030423..14041200Poly synthetase 2, putative
LOC_Os01g24940OsAffx.28592.1.S1_at1/111+14030423..14041200Poly synthetase 2, putative
LOC_Os01g24940Os.35524.1.S3_at1/111+14030423..14041200Poly synthetase 2, putative
LOC_Os01g24950Os.27106.1.S1_at11/111+14042084..14046682Exocyst complex subunit Sec15-like family protein, expressed
LOC_Os01g24960OsAffx.22830.1.S1_at11/111+14050615..14051985dirigent, putative
LOC_Os01g24970OsAffx.11197.1.S1_at11/111+14058802..14059101hypothetical protein
LOC_Os01g24980Os.27188.1.S1_at11/111+14060142..14063181oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006471biological_processprotein amino acid ADP-ribosylation
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003950molecular_functionNAD+ ADP-ribosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24852.1.A1_at--70--1491Chr01:14035840..14035864 (25 bp)
AGCACCTGTTACTGGCTACATGTTT
LOC_Os01g24940
Os.24852.1.A1_at--773--3111Chr01:14035907..14035931 (25 bp)
AATTATTGCTATGCTTCAGAAGCCT
LOC_Os01g24940
Os.24852.1.A1_at--800--9651Chr01:14035922..14035946 (25 bp)
TCAGAAGCCTGCAGGTCCGGTGTGC
LOC_Os01g24940
Os.24852.1.A1_at--560--6551Chr01:14036413..14036437 (25 bp)
GATTATGATGCCAATAACCTGCCAA
LOC_Os01g24940
Os.24852.1.A1_at--849--5491Chr01:14036933..14036957 (25 bp)
GAACACAGCAGAGTCGAAGATCACG
LOC_Os01g24940
Os.24852.1.A1_at--743--6491Chr01:14036973..14036997 (25 bp)
GTTCCACTTGGAAAACCTAAGGCAG
LOC_Os01g24940
Os.24852.1.A1_at--762--3211NONE
CAAGAGTTGTAGTCAGCACGGAGAT
NONE
Os.24852.1.A1_at--793--5531Chr01:14037216..14037240 (25 bp)
GAAACCGTACCATCTCAGTACTTGT
LOC_Os01g24940
Os.24852.1.A1_at--1008--8891Chr01:14037281..14037305 (25 bp)
TGAGTCAGGCTGTTAGCCTTCCTAG
LOC_Os01g24940
Os.24852.1.A1_at--254--4451Chr01:14037296..14037320 (25 bp)
GCCTTCCTAGCATTTTGATGTCGTG
LOC_Os01g24940
Os.24852.1.A1_at--813--7431Chr01:14037335..14037359 (25 bp)
GTGTATATATGAACCATCGCAATGC
LOC_Os01g24940
Target Sequence 
AGCACCTGTTACTGGCTACATGTTTGGGAAAGGAGTATACTTTGCTGATATGTTTTCCAAGAGTGCAAATTATTGCTATG
CTTCAGAAGCCTGCAGGTCCGGTGTGCTGCTTCTATGTGAGGTTGCACTCGGTGAGATGAATGAGCTACTAAATGCAGAT
TATGATGCCAATAACCTGCCAAAGGGAAAGCTAAGCACGAAAGGAGTTGGCCAAACAGAACCGAACACAGCAGAGTCGAA
GATCACGGATGATGGTGTGGTTGTTCCACTTGGAAAACCTAAGGCAGAGCCTTCAAAAAGGGGTAGCTTGCTGTACAATG
AGTNCATAGTTTATAACGTAGATCAGATAAGGATGCGGTACGTTNTCCATGTNTCCTTCAACTTCAAGAAACGGTAGACA
AGAGTTGTAGTCAGCACGGAGATGAAACCGTACCATCTCAGTACTTGTAAGGTTATGTCATTGGGTGGTACATATATTTG
TGAACAACTGAGTCAGGCTGTTAGCCTTCCTAGCATTTTGATGTCGTGATGCTGTGACATGTGTATATATGAACCATCGC
AATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24852.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis