Browse Element(s) Details


OsAffx.11196.2.S1_at

Description tigr:9629.m02414
TID=OsAffx.11196.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g249303/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24880Os.5342.2.S1_x_at10/111+13994996..14001917VIP2 protein, putative, expressed
LOC_Os01g24890NANA1+14003761..14006639transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24900OsAffx.23377.2.S1_at11/111+14008548..14009041hypothetical protein
LOC_Os01g24910OsAffx.7362.1.S1_x_at1/111+14009272..14011314transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24920OsAffx.23378.1.S1_at5/111+14013845..14021269WGR domain containing protein, expressed
LOC_Os01g24930OsAffx.11196.1.S1_s_at11/111+14025570..14026564hypothetical protein
LOC_Os01g24930OsAffx.11196.2.S1_at3/111+14025570..14026564hypothetical protein
LOC_Os01g24930OsAffx.11196.1.S1_at1/111+14025570..14026564hypothetical protein
LOC_Os01g24940Os.24852.1.A1_at10/111+14030423..14041200Poly synthetase 2, putative
LOC_Os01g24940OsAffx.28592.1.S1_at1/111+14030423..14041200Poly synthetase 2, putative
LOC_Os01g24940Os.35524.1.S3_at1/111+14030423..14041200Poly synthetase 2, putative
LOC_Os01g24950Os.27106.1.S1_at11/111+14042084..14046682Exocyst complex subunit Sec15-like family protein, expressed
LOC_Os01g24960OsAffx.22830.1.S1_at11/111+14050615..14051985dirigent, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11196.2.S1_at--348--10831NONE
TTGTGTCACTGACAGACGCACCCAT
NONE
OsAffx.11196.2.S1_at--573--8671NONE
TGTGTCACTGACAGACGCACCCATG
NONE
OsAffx.11196.2.S1_at--64--7451NONE
GTGTCACTGACAGACGCACCCATGG
NONE
OsAffx.11196.2.S1_at--912--8731NONE
TGTCACTGACAGACGCACCCATGGC
NONE
OsAffx.11196.2.S1_at--32--7111NONE
GTCACTGACAGACGCACCCATGGCA
NONE
OsAffx.11196.2.S1_at--439--9691NONE
TCACTGACAGACGCACCCATGGCAA
NONE
OsAffx.11196.2.S1_at--569--3331NONE
CACTGACAGACGCACCCATGGCAAT
NONE
OsAffx.11196.2.S1_at--1127--7891Chr01:14025616..14025640 (25 bp)
GGTTCGCAGGTAACCCTGGAAGAAT
LOC_Os01g24930
OsAffx.11196.2.S1_at--58--3911Chr01:14025601..14025625 (25 bp)
CTGGAAGAATTATCGTAGTTACCAC
LOC_Os01g24930
OsAffx.11196.2.S1_at--1018--8471Chr01:14025600..14025624 (25 bp)
TGGAAGAATTATCGTAGTTACCACA
LOC_Os01g24930
Target Sequence 
TTGTGTCACTGACAGACGCACCCATGGCAATTAAGGACCGGTTCGCAGGTAACCCTGGAAGAATTATCGTAGTTACCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11196.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis